- Transcript HORVU2Hr1G077560.12
- Transcript IDHORVU2Hr1G077560.12
- Gene IDHORVU2Hr1G077560
Barley RTD
Exon Structure of HORVU2Hr1G077560.12
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 560838196 | 560837873 | - |
| chr2H | 2 | 560839277 | 560838422 | - |
| chr2H | 3 | 560840111 | 560839880 | - |
| chr2H | 4 | 560841176 | 560840973 | - |
| chr2H | 5 | 560841423 | 560841263 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g36660.1 | +3 | 0.0 | 585 | 317/401 (79%) | protein|calmodulin binding protein, putative, expressed |
| TAIR PP10 | AT5G57580 @ ARAPORT AT5G57580.1 @ TAIR |
+3 | 1e-92 | 298 | 183/403 (45%) | Symbols: | Calmodulin-binding protein | chr5:23314994-23317683 REVERSE LENGTH=647 |
| BRACH PP3 | Bradi3g46060.2.p | +3 | 5e-175 | 511 | 279/403 (69%) | pacid=32814594 transcript=Bradi3g46060.2 locus=Bradi3g46060 ID=Bradi3g46060.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1777 bp)
>HORVU2Hr1G077560.12 1777 150831_barley_pseudomolecules TGTACAAGAAACATTACCCTCCTGCGCTTAAGGATGATGTTTGGAGACTGGAAAAGATTG GAAAGGACGGTGCATTCCACGGGAAACTAAACTCAAACGGAATCTATACAGTTGAACATT TTCTTCAACTTCTTGTTAAAGATCAACAGAAGTTAAGAAGTATCCTTGGTACTGGCATGT CAAATAAGATGTGGGAAAGTCTTGTTGAACATGCAAAAACTTGTGTTCTGAGTGGCAAAC ATTATATATATTACTCGAAGGATACAGCAAGTGTTGGTGCAATATTCAATAACATATATG AGTTCACTGGTTTGATTGCTGATGATCAGTTTATTTCAACGGAAAATCTTACTGAAAACC AGAGGGTGTTTGCGGATACGTTGGTGAAGCAAGCATACGATGATTGGATCAATGTTGTAG AATATGATGGCAAGGGATTGTTGAAATTTAAGCAGAAAAAGAAATCTGTCACAACAAGAA GTGATGTTGCAAATGTCTCTACAAGCTACACTTCTTATGATTCAGCGCACTCTCAGAAAC AATTGGCACGAGGACATGCCAATATTGAGCGATCTCTCATGAGCAGTACGACTAAAGACG AGACAAGAATTGCATCCAACGGGAATCAAGTAGCAATATATGAAGCCAATCCTCAGGACA TTTCACCAAGTATTACCATGCAATATGGCATGAGTTCATTGATCCCTGAAGGCCAGTTCA ATGGCTCTTCCATCCAAACTCAAGCATCAAGAAGCTCCAACATGCTAGCATTTGGACCTC CACCACAGCAGCCGCATAACTTCGAATTCTCAGCATTTGGTCTGTCCATGCAATCCCCAG CTCCTAATCCTTTTGATGACTGGCCTGGACGGTTGCAGGAGAACCGCGGTGGTGTTGATG ACTGTCTGATGGAGGAGATAAGAGGGAGAAGCCATGACATGCTGGAGAATGAAGAAGAGA TGCAACATATGCTGCGCATTCTTAGCGGCGGGGCAGCAGCAAACATGAATAATGTAGGTG GCTTTCCCTCCTACCCTTCTCCTGTACCGGACTTCAACTTCGTGGATGATCGTGCTCCCT CATCCGGTAAGGCTGTTGTTGGGTGGCTTAAGATTAAGGCTGCCATGCGGTGGGGCATCT TCGTCAGGAAGAAAGCAGCTGAGAGAAGAGCTCAGCTTGTTGAGCTGGATGACTAGGGGA TACGGATGTTGGTAAGACACTTGTTTTTCTCGTCTTGTATAATTGCTTTGTTGACGCAAT TATAGTCAGGATCTCAAGCTCCAAAAGTATGAATGGACTCACGTTGGTTGTATAGGTAGC TGTTTGATGGTCATTATCTAAGTTTTGTTGGTGTTCAGAAAAACAAAACTGCTACAACAT TGGCCTCTACTGTGCAAACTTATTTGTTGGAGATTGGACACTTGAAACAGGCTTTTTTTA TGGGAACTAGCAGGCCTTATAAACTGAAACGGAGGGAGTACTGTACATATGAAGAAAGAA CCTCTCCGCCTAACTCATCTTGGAAAAACTAAAAGAGTTCTACGGTTTTAATAACCAGCG AATGCCAGCTGGCTAAGAACGGCAAAACGAATGTTTTCTATGGCAACTTATGGTGACATT AGGATAGCAATTTCATTTAGCAATCATGACAATGAAATAGCCATCCTTTGGACAATATAA ATTGCCATAAAAATGTTTGACTTGCCATGCTTTCCCAATGAACATCACAATAACGTTGCC CAATTGTATGGTTAGATTCTTTCCATAAATGTCAAAG