- Transcript HORVU2Hr1G076830.21
- Transcript IDHORVU2Hr1G076830.21
- Gene IDHORVU2Hr1G076830
Barley RTD
Exon Structure of HORVU2Hr1G076830.21
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 554964452 | 554964303 | - |
| chr2H | 2 | 554965007 | 554964530 | - |
| chr2H | 3 | 554965179 | 554965082 | - |
| chr2H | 4 | 554966070 | 554965965 | - |
| chr2H | 5 | 554967079 | 554966990 | - |
| chr2H | 6 | 554967248 | 554967169 | - |
| chr2H | 7 | 554967462 | 554967364 | - |
| chr2H | 8 | 554967652 | 554967557 | - |
| chr2H | 9 | 554968422 | 554968316 | - |
| chr2H | 10 | 554969777 | 554969638 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g35920.2 | +1 | 0.0 | 646 | 362/459 (79%) | protein|nonsense-mediated decay UPF3, putative, expressed |
| TAIR PP10 | AT1G33980 @ ARAPORT AT1G33980.1 @ TAIR |
+1 | 4e-89 | 280 | 178/423 (42%) | Symbols: ATUPF3, UPF3 | Smg-4/UPF3 family protein | chr1:12351719-12354401 FORWARD LENGTH=482 |
| BRACH PP3 | Bradi5g10820.1.p | +1 | 0.0 | 685 | 382/457 (84%) | pacid=32810361 transcript=Bradi5g10820.1 locus=Bradi5g10820 ID=Bradi5g10820.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1444 bp)
>HORVU2Hr1G076830.21 1444 150831_barley_pseudomolecules ATGAAGGACCCGGCGCACCGCACGAAGGTGGTGCTCAGGCGGCTGCCGCCGGCGATTGCG CAGCAGGCCGTCGTGGACCAGGTTGACGCGCGCTTCGCTGGGCGCTATGACTGGGCCCGT TTCCGCCCCGGTAATGCCAGCCAAAAGAATCATAGATATTCTCGTCTCTACCTTAACTTC AAGAGCCCAGAAGATGTTGTTGAGTTTGCTGAGTTCTTCAATGGGCATGTATTTGTGAAT GAAAAAGGTGCTCAATTTAAAGCTCTTGTGGAATATGCACCATCACAACAGGTTCCGAAG TCAAATATCAAGAAAGATGCTCGTCAAGGAACTATAACAAAAGATCCAGAATACTTGGAG TTTCTTGAGCTTATATCAAAGCCCACTGAGCATTTGCCAAGTGCTGAAATTCAGCTTGAA AGGAAAGAAGCTGAAAGAGCAGCTGCTGGAAAGGAGCCACCTGTTATTACACCTCTTATG GTTTATGTTCGTCAGCAAAGGGCGGCTAAGAGTATGGCTCAGAGGTCTGTAAGTAGCAGA CTAAGCAGAAAAGTTGCAGGTGTGGTAACCAGTAGTTCTAGTCCATCTAAAAGGTCTTCT GAAAGGCGCAGGCAGTATGTTGTGCGAGACAATGCTAAGGAAAAGCCGACTTACATCTTA GCACCAAAGAGAGATGATCATACACAGAGAGAGAAAATCATTGCTGGAACTTCAGGTGAT GCTACAAGCGGAGGGCCATCTGGGTCTGCTCAGGTTATCGACGGTAAAAGGGACAAAATT GTCCTCCTTAAAGGAAGAGCGAGGGTTGATTCCAATATATCTGATAGCTCAACCCCGCAG CAGTCTGTGCCCCCGTCGAGAAATACACCTCCATCAACTTCTAGACAAGACCAGCGAAAT GAGGCCAGTGGCAGAATTATCAAGACTATACTTTCAAACAAGGAAGGACGCCATGCAATA GCATCTCAACATGAGCAAGAAGGTCACATAATTAGTGCCGAGAAGGATAAGAGGCCACCA CGGGCTCCAAACTCGCGTTCCACTGCAAAAGATCAGATTGTTGAAAATGCTGAGAAAAAC CATTATGATGACAAGCATAATCATGTGCATGGTTCTGGACCCATTGGTGAGAAGATTGAA AGACATGCCAGAAATAGAGATAGGCCTGACCGAGGTGTTTGGGCCCCTCGTCGCTATGAC AAGTCTGCATCAGGAGGCGGTGCGCAAGCCTCATTGTCTGAGTTCCCGCTAATGCAGTCA CACTCTATGGACAATGTATCTCAGCAAGTAGATGGCCATGGAGAGCGAAAAATAGACACA AGGGGTCCTGGTGGCCGCGGTGGCCTTGTGGAGAATGGTTTGTTTTTATCTGGTTATAAA TAATAGTTAGCGATTAGGAAACAAGCAATCCAAAGTTTTTTCTATAGCAGTTTATGTACT ATGC