Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u1254795.9--7665-330Containing




Transcripts from Gene HORVU2Hr1G076830

TranscriptLength(bp)Description
HORVU2Hr1G076830.12938gene=HORVU2Hr1G076830 CDS=378-1769
HORVU2Hr1G076830.22800gene=HORVU2Hr1G076830 CDS=378-1790
HORVU2Hr1G076830.32828gene=HORVU2Hr1G076830 CDS=378-1904
HORVU2Hr1G076830.42745gene=HORVU2Hr1G076830 CDS=383-1885
HORVU2Hr1G076830.52853gene=HORVU2Hr1G076830 CDS=621-1748
HORVU2Hr1G076830.62766gene=HORVU2Hr1G076830 CDS=383-1906
HORVU2Hr1G076830.72679gene=HORVU2Hr1G076830 CDS=361-1860
HORVU2Hr1G076830.82795gene=HORVU2Hr1G076830 CDS=361-1728
HORVU2Hr1G076830.92758gene=HORVU2Hr1G076830 CDS=355-1398
HORVU2Hr1G076830.102761gene=HORVU2Hr1G076830 CDS=355-1401
HORVU2Hr1G076830.111640gene=HORVU2Hr1G076830 CDS=670-933
HORVU2Hr1G076830.122620gene=HORVU2Hr1G076830 CDS=419-1915
HORVU2Hr1G076830.132623gene=HORVU2Hr1G076830 CDS=419-1918
HORVU2Hr1G076830.142456gene=HORVU2Hr1G076830 CDS=393-1892
HORVU2Hr1G076830.152474gene=HORVU2Hr1G076830 CDS=398-1921
HORVU2Hr1G076830.162251gene=HORVU2Hr1G076830 CDS=2-1591
HORVU2Hr1G076830.172731gene=HORVU2Hr1G076830 CDS=377-1423
HORVU2Hr1G076830.182619gene=HORVU2Hr1G076830 CDS=383-1747
HORVU2Hr1G076830.192590gene=HORVU2Hr1G076830 CDS=383-1747
HORVU2Hr1G076830.20838gene=HORVU2Hr1G076830 CDS=24-248
HORVU2Hr1G076830.211444gene=HORVU2Hr1G076830 CDS=1-1383
HORVU2Hr1G076830.221456gene=HORVU2Hr1G076830 CDS=1-1398
HORVU2Hr1G076830.231444gene=HORVU2Hr1G076830 CDS=1-1395



Exon Structure of HORVU2Hr1G076830


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os04g35920.2 +3 0.0 647 366/462 (79%) protein|nonsense-mediated decay UPF3, putative, expressed
TAIR PP10 AT1G33980 @ ARAPORT
AT1G33980.1 @ TAIR		 +3 7e-83 276 179/425 (42%) Symbols: ATUPF3, UPF3 | Smg-4/UPF3 family protein | chr1:12351719-12354401 FORWARD LENGTH=482
BRACH PP3 Bradi5g10820.2.p +3 0.0 682 383/457 (84%) pacid=32810360 transcript=Bradi5g10820.2 locus=Bradi5g10820 ID=Bradi5g10820.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons