- Transcript HORVU2Hr1G076830.17
- Transcript IDHORVU2Hr1G076830.17
- Gene IDHORVU2Hr1G076830
Barley RTD
Exon Structure of HORVU2Hr1G076830.17
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 554963517 | 554962892 | - |
| chr2H | 2 | 554964049 | 554963996 | - |
| chr2H | 3 | 554964452 | 554964158 | - |
| chr2H | 4 | 554965179 | 554964530 | - |
| chr2H | 5 | 554966070 | 554965968 | - |
| chr2H | 6 | 554967079 | 554966975 | - |
| chr2H | 7 | 554967248 | 554967169 | - |
| chr2H | 8 | 554967462 | 554967364 | - |
| chr2H | 9 | 554967652 | 554967557 | - |
| chr2H | 10 | 554968422 | 554968316 | - |
| chr2H | 11 | 554970153 | 554969638 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g35920.2 | +2 | 1e-141 | 431 | 245/282 (87%) | protein|nonsense-mediated decay UPF3, putative, expressed |
| TAIR PP10 | AT1G33980 @ ARAPORT AT1G33980.1 @ TAIR |
+2 | 2e-64 | 225 | 107/169 (63%) | Symbols: ATUPF3, UPF3 | Smg-4/UPF3 family protein | chr1:12351719-12354401 FORWARD LENGTH=482 |
| BRACH PP3 | Bradi5g10820.2.p | +2 | 1e-137 | 421 | 243/278 (87%) | pacid=32810360 transcript=Bradi5g10820.2 locus=Bradi5g10820 ID=Bradi5g10820.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2731 bp)
>HORVU2Hr1G076830.17 2731 150831_barley_pseudomolecules TTTCCCCTTCCCGTGTCGCCTTTTCGTTTCGTCCTCGTCGTCGTCCTCCCTCTTCCACCC CCCTTCCCAATCTCCGACAGTTTCCAATTTCTCATCTCCCAACCCCAAACCCCAACCCCA ACCAGAGACCGAAAAGAGTCGCACGCGACTTCGCGAGAGGGGGGAAGCAGCAGACGAGAG CGAGAGACCTCCTCCTTCCCCAACCCCGCCCCAAACCCTAACCCTTCATCAGATCTCGCG CCCGTCTGCCCTCCCGCCCCGTCCCGCCTCGATGTGACCCGGCCCCTAGGGTTTGTGCCG GCGCGGTGTGGTGGTGGGTCCCGGTTCGTGGGCGGATTTCGGACCCGAGGAGTTGGAGCT GGAGGCGCGCGCGCACATGAAGGACCCGGCGCACCGCACGAAGGTGGTGCTCAGGCGGCT GCCGCCGGCGATTGCGCAGCAGGCCGTCGTGGACCAGGTTGACGCGCGCTTCGCTGGGCG CTATGACTGGGCCCGTTTCCGCCCCGGTAATGCCAGCCAAAAGAATCATAGATATTCTCG TCTCTACCTTAACTTCAAGAGCCCAGAAGATGTTGTTGAGTTTGCTGAGTTCTTCAATGG GCATGTATTTGTGAATGAAAAAGGTGCTCAATTTAAAGCTCTTGTGGAATATGCACCATC ACAACAGGTTCCGAAGTCAAATATCAAGAAAGATGCTCGTCAAGGAACTATAACAAAAGA TCCAGAATACTTGGAGTTTCTTGAGCTTATATCAAAGCCCACTGAGCATTTGCCAAGTGC TGAAATTCAGCTTGAAAGGAAAGAAGCTGAAAGAGCAGCTGCTGGAAAGGAGCCACCTGT TATTACACCTCTTATGGTTTATGTTCGTCAGCAAAGGGCGGCTAAGAGTATGGCTCAGAG GTCTGTAAGTAGCAGACTAAGCAGAAAAGTTGCAGGTGTGGTAACCAGTAGTTCTAGTCC ATCTAAAAGGTCTTCTGAAAGGCGCAGGGCCTCCACTTCAACGCAGTATGTTGTGCGAGA CAATGCTAAGGAAAAGCCGACTTACATCTTAGCACCAAAGAGAGATGATCATACACAGAG AGAGAAAATCATTGCTGGAACTTCAGATGCTACAAGCGGAGGGCCATCTGGGTCTGCTCA GGTTATCGACGGTAAAAGGGACAAAATTGTCCTCCTTAAAGGAAGAGCGAGGGTTGATTC CAATGTAAGCAGACACATTCCGCGAGGTTTTTTATCATTTAATTGGTATGGACTGTCATA TTATCTGGTTTGTCACAGATATCTGATAGCTCAACCCCGCAGCAGTCTGTGCCCCCGTCG AGAAATACACCTCCATCAACTTCTAGACAAGACCAGCGAAATGAGGCCAGTGGCAGAATT ATCAAGACTATACTTTCAAACAAGGAAGGACGCCATGCAATAGCATCTCAACATGAGCAA GAAGGTCACATAATTAGTGCCGAGAAGGATAAGAGGCCACCACGGGCTCCAAACTCGCGT TCCACTGCAAAAGATCAGATTGTTGAAAATGCTGAGAAAAACCATTATGATGACAAGCAT AATCATGTGCATGGTTCTGGACCCATTGGTGAGAAGATTGAAAGACATGCCAGAAATAGA GATAGGCCTGACCGAGGTGTTTGGGCCCCTCGTCGCTATGACAAGTCTGCATCAGGAGGC GGTGCGCAAGCCTCATTGTCTGAGTTCCCGCTAATGCAGTCACACTCTATGGACAATGTA TCTCAGCAAGTAGATGGCCATGGAGAGCGAAAAATAGACACAAGGGGTCCTGGTGGCCGC GGTGGCCTTGTGGAGAATGGTTTGTTTTTATCTGGTTATAAATAATAGTTAGCGATTAGG AAACAAGCAATCCAAAGTTTTTTCTATAGCAGTTTATGTACTATGCTTCATGGTGTAATA TGCTATATTCAGGAAACAGGCACCCCAACCGCCGTGGTCCGCCACGTGGGCCGAAGGAGA TGGAAATCCCTCCTATTGCATCTGATGGAAAGCCTTCGAAGAGGGGCCCTGCTAGCTATG TGGCTCATGAGAGACAAGTATGGGTTCAGAAGTCAAGTTCAGGATCGTGAGTTTGTCCAC CAATGATACTTTCATCAAAATAGATGTTGCAAGTTGTGGAGAAGTCTCTGGATTTTGCGG CTCATTCTGATTGTGAATGAAATGACTGTTGGTGAGATGGTTCTGTGAAGTGCAATTCCA GATTTGTCAACGGAAGTCTCAGCTATAGCTGAAAAAGCAGCTCTTTGATTTGATTCACAG AATCACAGCAATAGTGAAGTAACATAACCCACCAGTAGGTAGCTCTCCATCACTTTGGGT GAGATTTGATTTTGGACCCAAGGGTGCTATATCTGGAGGGACGGATGGAAATTAGGCTGG CATCAATACCTCGAGACAGTGGTCACATATTTCCAAGACCCCTGGAGGCTATACACAAAC CCGACGATTCATCAGTGATGGATGTACATATCTCTAGAGAAAGAAGAGGTCTGGCTCTGA TTGCTGTTTACAGGTTAGAGGTGCCATGTATCTACAAAGAGATAAGAGTTACCAGACTAC CCAGTTTGCTAAATAAAGGTGAATTTTTAGTTAGTTGATTATGAGAACCCCTGTATCCCG GCGGCTGCAGTTGCAGTCAGTAAGACCGAAGTTACCGTGGAGTGCAAAGTGACAGCACTA TCATGTTTTATGCTCCAGGTTGAATGGAATG