- Transcript HORVU2Hr1G076830.11
- Transcript IDHORVU2Hr1G076830.11
- Gene IDHORVU2Hr1G076830
Barley RTD
Exon Structure of HORVU2Hr1G076830.11
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 554963517 | 554962826 | - |
| chr2H | 2 | 554964049 | 554963996 | - |
| chr2H | 3 | 554964276 | 554964158 | - |
| chr2H | 4 | 554964452 | 554964390 | - |
| chr2H | 5 | 554964980 | 554964530 | - |
| chr2H | 6 | 554965342 | 554965082 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os04g35920.2 | +1 | 3e-93 | 295 | 189/267 (71%) | protein|nonsense-mediated decay UPF3, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi5g10820.2.p | +1 | 3e-108 | 333 | 204/273 (75%) | pacid=32810360 transcript=Bradi5g10820.2 locus=Bradi5g10820 ID=Bradi5g10820.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1640 bp)
>HORVU2Hr1G076830.11 1640 150831_barley_pseudomolecules CTTTACAAGGGTAACTGTTAATATGTTGTTACACTAAATGATTCGTTACTTAATCTTTAG TTCTTTACCTATGATTCGCTACTTTCCATCCTTACAGTAGAATACAAATGCCTAGTTCCT CTATGATATTAATACTGTTGTTTTGTTTTGTCCCGTCTTGTAGATGCTACAAGCGGAGGG CCATCTGGGTCTGCTCAGGTTATCGACGGTAAAAGGGACAAAATTGTCCTCCTTAAAGGA AGAGCGAGGGTTGATTCCAATTCTGTGCCCCCGTCGAGAAATACACCTCCATCAACTTCT AGACAAGACCAGCGAAATGAGGCCAGTGGCAGAATTATCAAGACTATACTTTCAAACAAG GAAGGACGCCATGCAATAGCATCTCAACATGAGCAAGAAGGTCACATAATTAGTGCCGAG AAGGATAAGAGGCCACCACGGGCTCCAAACTCGCGTTCCACTGCAAAAGATCAGATTGTT GAAAATGCTGAGAAAAACCATTATGATGACAAGCATAATCATGTGCATGGTTCTGGACCC ATTGGTGAGAAGATTGAAAGACATGCCAGAAATAGAGATAGGCCTGACCGAGGTGTTTGG GCCCCTCGTCGCTATGACAAGTCTGCATCAGGAGGCGGTGCGCAAGCCTCATTGTCTGAG TTCCCGCTAATGCAGTCACACTCTATGGACAATGTATCTCAGCAAGTAGATGGCCATGGA GAGCGAAAAATAGACACAAGGGGTCCTGGTGGCCGCGGTGGCCTTGTGGAGAATGGAAAC AGGCACCCCAACCGCCGTGGTCCGCCACGTGGGCCGAAGGAGATGGAAATCCCTCCTATT GCATCTGATGGAAAGCCTTCGAAGAGGGGCCCTGCTAGCTATGTGGCTCATGAGAGACAA GTATGGGTTCAGAAGTCAAGTTCAGGATCGTGAGTTTGTCCACCAATGATACTTTCATCA AAATAGATGTTGCAAGTTGTGGAGAAGTCTCTGGATTTTGCGGCTCATTCTGATTGTGAA TGAAATGACTGTTGGTGAGATGGTTCTGTGAAGTGCAATTCCAGATTTGTCAACGGAAGT CTCAGCTATAGCTGAAAAAGCAGCTCTTTGATTTGATTCACAGAATCACAGCAATAGTGA AGTAACATAACCCACCAGTAGGTAGCTCTCCATCACTTTGGGTGAGATTTGATTTTGGAC CCAAGGGTGCTATATCTGGAGGGACGGATGGAAATTAGGCTGGCATCAATACCTCGAGAC AGTGGTCACATATTTCCAAGACCCCTGGAGGCTATACACAAACCCGACGATTCATCAGTG ATGGATGTACATATCTCTAGAGAAAGAAGAGGTCTGGCTCTGATTGCTGTTTACAGGTTA GAGGTGCCATGTATCTACAAAGAGATAAGAGTTACCAGACTACCCAGTTTGCTAAATAAA GGTGAATTTTTAGTTAGTTGATTATGAGAACCCCTGTATCCCGGCGGCTGCAGTTGCAGT CAGTAAGACCGAAGTTACCGTGGAGTGCAAAGTGACAGCACTATCATGTTTTATGCTCCA GGTTGAATGGAATGTGAGGCTATTTTGCTTGCTGATGTTGTGTTTTCTACTGTGACGTCA CTCACCATATAAGTTTTTTT