- Transcript HORVU2Hr1G060680.5
- Transcript IDHORVU2Hr1G060680.5
- Gene IDHORVU2Hr1G060680
Barley RTD
Exon Structure of HORVU2Hr1G060680.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 405594558 | 405593749 | + |
| chr2H | 2 | 405594715 | 405594650 | + |
| chr2H | 3 | 405594914 | 405594845 | + |
| chr2H | 4 | 405595321 | 405595029 | + |
| chr2H | 5 | 405595560 | 405595400 | + |
| chr2H | 6 | 405597685 | 405596793 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g05010.1 | +1 | 2e-77 | 256 | 148/239 (62%) | protein|helix-loop-helix DNA-binding domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g58230.1.p | +1 | 2e-137 | 410 | 249/375 (66%) | pacid=32794195 transcript=Bradi1g58230.1 locus=Bradi1g58230 ID=Bradi1g58230.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2293 bp)
>HORVU2Hr1G060680.5 2293 150831_barley_pseudomolecules CAGCGATGTCAACGGATCCTCCCCCTCCATACGAATGCCGCACAACTCTTCTCTCCTCTT CTCTTCTCTCGTCCTTTTATTATTCCCGAGAAAATCGAACCCAGCTAGACAGTCCACAGC TCTGGCACACAGCTTCGCTCTCCGCCGGTTTCTGCTCAAGTGGAGAGGCCCGTCAGCTCG ATCGGTTCCAGGATCATGGACGACGGCGCAACACCGCCGCCCAACCACAAGAGGCACCTC CCGTAATTTACGAGCTTCTCTCACCAATTGATTCGTTTCTTGTGTCTGTGCTTCTTGTTC CTTGTGAGAGCCTTCTCGTGGCGCAGACTGCGGGAGGCGGGCGGCGACCTCGTGGAGCTG CTGTGGCAGAACGGAGCCATCGTAGCGCAGGCGCAGGCGCAGACGCCGCACCGCCGGTGT TCCCAGAGCGGCGCGGCGAGCGGCGTCACCGCGGAGGACGCGACCGCGTGGTTGATCCCG GACGGCGGCGGCGGCAGGGACCTGTACTCGCACCTCTGGCACGGCGTCGCCGACGGGGAT GCGGGCGCGCTCGTGGCGGGGAGCGGCGGCGCCGGGACGAGCTTCTGCGGGAGCAACGCG GTGACGGCGCCGGCGCTGCTGCCATCGCCGGGCTCGTCCGCAGCGGGAGGCCAAGCGCTA CTGTTCAAGAGGGGGAGGGACCAACTGGATAGCCGCCGAGAGGACGAACTGGATACCGAC GACTGTGAGGCCGTCAATGAGACCCGGCCGCAGCGGCCGGCAGCGAAGCGCAGGACTCGT GCTGCCGAGGTCCATAACCAATCAGAGCGGAGAAGAAGGGATCGGATCAACGAAAAGATG AAAGCATTGCAAGAACTCGTACCCCATTGCAACAAGAGCGACAAGGCGTCCATTCTAGAC GAAGCAATCGAGTACTTGAAGTCTCTGCAACTGCAAGTTCAGGTTCTGTGGATGACTACT GGGATGACGCCCATGATGTACCCTGGTGCTCACCAACTCATGTCGCCGATGGCCGTGGGC TTGAACTCAGCGTGCATTCCCACGGCGCAGAGCCTTAGCCAGCTGCAAAAAAGGGTAGCA CCGTTTATGAACAATCATCTCCCCGATCAAATGCCTCAGGTCCAATCTCCAGCTATCGAT TCCCTCGATGTGGCAAACCAGATGCAAAACAATGGTGTCTGTGGTGAGCCAAGAAACCCT TTCCTGCATCCAGACGACACGCTAACAGCGGCATCTCAGCTTCCGGGTATGTTGCCCTAT GCATCTCAAAAGGCACAACAAAACCAGAATCATCAGTTACTGCCTAGCATAGACATGCCA GCTTCAGGACCCTGCCCGCCATCTTTTGCTGACGGAACGGGAAAATAAGGCCAGGCAGTT TCAAGCAAGATGATTTACTGGGGGGTTGGATACAGGAGGTCAGAGCAAACTAGTCATAGA AGAGAAGAGATATGGTACCAAGACACTCTGTGCTGTAAGGCCAGGGGCAGATCATGCAAC ATTGAGCCTTGGTGGCACCACTAAGCAACCAACACGTATGGGCCCGAGATCATGCGGAAT TGCGGATAGCAGATACTATTCTTATCCGAAGAATAGTCTTGAGCACCACCTTTCTATTTA TGGAAGGATTTGGTCCATGGGAGATGAACTTGGGGCTTTGACAGGGACAACAAAAGATGA TTGTGCCGATATGCTGCAGATCTGGAGATGACATTGTTGGAGCCAGGATCTGCACAATGA CACAACTTGTGCACTTCTGCTCGTCTTTCCACCGATGTAACTCCACTCCACTGGTGAGTC CTAATGGGACTGTCCTGTTGACCCGCGGTCGAGCTATCGATATTCGAATGGACGGCTGAA ACAAGGGTAGGCAGAAGAAACTTGTGCTTTTCGGACACAATTGTAGATCAGGTTTGCATA TGCCTTTCAGAAATTCAGACAAGTGGTACATGAAGATCATTCTCATTCGGCCATCAGGAT CGCGAGATTATCGCCTTACCCTTAACCCTGGAAAGATTGTACCGCATGTGGTGATGTCCT GTTACAAGTTAATCAGGACTGTGATGGGCATCATCCGTTTCGTCACAGGGTAATTAGTCT CTGAAAATATCAATGATGCTGCATCTTTTGTTGTGTTATACTCCAATTGTGAGTCAGCTT CAGTCGCCGTCAGGGGAGACTGGGACTTTGCTTCGCATTTACACGTCCAGATTTGGTTGT CATGCTCGTATCATAGCGATTGATGTAGATGCTTGGCAATTTGGAGGACAGATATTCATA CCATGAAAAAAAA