Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u11397	89.6	+	+	4118	-478	Containing

Transcripts from Gene HORVU2Hr1G060680

Transcript	Length(bp)	Description
HORVU2Hr1G060680.1	2239	gene=HORVU2Hr1G060680 CDS=223-1311
HORVU2Hr1G060680.2	2346	gene=HORVU2Hr1G060680 CDS=223-1311
HORVU2Hr1G060680.3	2310	gene=HORVU2Hr1G060680 CDS=851-1381
HORVU2Hr1G060680.4	2289	gene=HORVU2Hr1G060680 CDS=849-1379
HORVU2Hr1G060680.5	2293	gene=HORVU2Hr1G060680 CDS=838-1368
HORVU2Hr1G060680.6	1429	gene=HORVU2Hr1G060680 CDS=194-799
HORVU2Hr1G060680.7	2318	gene=HORVU2Hr1G060680 CDS=799-1332
HORVU2Hr1G060680.8	2422	gene=HORVU2Hr1G060680 CDS=799-1329
HORVU2Hr1G060680.9	2026	gene=HORVU2Hr1G060680 CDS=374-904
HORVU2Hr1G060680.10	1919	gene=HORVU2Hr1G060680 CDS=374-904
HORVU2Hr1G060680.11	1866	gene=HORVU2Hr1G060680 CDS=3-812
HORVU2Hr1G060680.12	1828	gene=HORVU2Hr1G060680 CDS=3-797
HORVU2Hr1G060680.13	1828	gene=HORVU2Hr1G060680 CDS=3-797
HORVU2Hr1G060680.14	1828	gene=HORVU2Hr1G060680 CDS=3-797
HORVU2Hr1G060680.15	1731	gene=HORVU2Hr1G060680 CDS=3-791
HORVU2Hr1G060680.16	898	gene=HORVU2Hr1G060680 CDS=3-758
HORVU2Hr1G060680.17	1808	gene=HORVU2Hr1G060680 CDS=2-754
HORVU2Hr1G060680.18	1650	gene=HORVU2Hr1G060680 CDS=1-726
HORVU2Hr1G060680.19	1838	gene=HORVU2Hr1G060680 CDS=3-614
HORVU2Hr1G060680.20	1591	gene=HORVU2Hr1G060680 CDS=3-560
HORVU2Hr1G060680.21	1591	gene=HORVU2Hr1G060680 CDS=3-560
HORVU2Hr1G060680.22	1553	gene=HORVU2Hr1G060680 CDS=1-606
HORVU2Hr1G060680.23	1600	gene=HORVU2Hr1G060680 CDS=2-568
HORVU2Hr1G060680.24	1559	gene=HORVU2Hr1G060680 CDS=1-480
HORVU2Hr1G060680.25	1666	gene=HORVU2Hr1G060680 CDS=1-480

Exon Structure of HORVU2Hr1G060680

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os07g05010.1	+1	9e-78	258	150/239 (63%)	protein|helix-loop-helix DNA-binding domain containing protein, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi1g58230.1.p	+1	9e-138	413	251/375 (67%)	pacid=32794195 transcript=Bradi1g58230.1 locus=Bradi1g58230 ID=Bradi1g58230.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons