- Transcript HORVU2Hr1G060680.24
- Transcript IDHORVU2Hr1G060680.24
- Gene IDHORVU2Hr1G060680
Barley RTD
Exon Structure of HORVU2Hr1G060680.24
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 405594911 | 405594857 | + |
| chr2H | 2 | 405595321 | 405595026 | + |
| chr2H | 3 | 405595560 | 405595400 | + |
| chr2H | 4 | 405597839 | 405596793 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g05010.1 | +1 | 1e-41 | 155 | 94/162 (58%) | protein|helix-loop-helix DNA-binding domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g58230.1.p | +1 | 1e-58 | 199 | 118/160 (74%) | pacid=32794195 transcript=Bradi1g58230.1 locus=Bradi1g58230 ID=Bradi1g58230.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1559 bp)
>HORVU2Hr1G060680.24 1559 150831_barley_pseudomolecules TCCATTCTAGACGAAGCAATCGAGTACTTGAAGTCTCTGCAACTGCAAGTTCAGGTCATG TGGATGACTACTGGGATGACGCCCATGATGTACCCTGGTGCTCACCAACTCATGTCGCCG ATGGCCGTGGGCTTGAACTCAGCGTGCATTCCCACGGCGCAGAGCCTTAGCCAGCTGCAA AAAAGGGTAGCACCGTTTATGAACAATCATCTCCCCGATCAAATGCCTCAGGTCCAATCT CCAGCTATCGATTCCCTCGATGTGGCAAACCAGATGCAAAACAATGGTGTCTGTGGTGAG CCAAGAAACCCTTTCCTGCATCCAGACGACACGCTAACAGCGGCATCTCAGCTTCCGGGT ATGTTGCCCTATGCATCTCAAAAGGCACAACAAAACCAGAATCATCAGTTACTGCCTAGC ATAGACATGCCAGCTTCAGGACCCTGCCCGCCATCTTTTGCTGACGGAACGGGAAAATAA GGCCAGGCAGTTTCAAGCAAGATGATTTACTGGGGGGTTGGATACAGGAGGTCAGAGCAA ACTAGTCATAGAAGAGAAGAGATATGGTACCAAGACACTCTGTGCTGTAAGGCCAGGGGC AGATCATGCAACATTGAGCCTTGGTGGCACCACTAAGCAACCAACACGTATGGGCCCGAG ATCATGCGGAATTGCGGATAGCAGATACTATTCTTATCCGAAGAATAGTCTTGAGCACCA CCTTTCTATTTATGGAAGGATTTGGTCCATGGGAGATGAACTTGGGGCTTTGACAGGGAC AACAAAAGATGATTGTGCCGATATGCTGCAGATCTGGAGATGACATTGTTGGAGCCAGGA TCTGCACAATGACACAACTTGTGCACTTCTGCTCGTCTTTCCACCGATGTAACTCCACTC CACTGGTGAGTCCTAATGGGACTGTCCTGTTGACCCGCGGTCGAGCTATCGATATTCGAA TGGACGGCTGAAACAAGGGTAGGCAGAAGAAACTTGTGCTTTTCGGACACAATTGTAGAT CAGGTTTGCATATGCCTTTCAGAAATTCAGACAAGTGGTACATGAAGATCATTCTCATTC GGCCATCAGGATCGCGAGATTATCGCCTTACCCTTAACCCTGGAAAGATTGTACCGCATG TGGTGATGTCCTGTTACAAGTTAATCAGGACTGTGATGGGCATCATCCGTTTCGTCACAG GGTAATTAGTCTCTGAAAATATCAATGATGCTGCATCTTTTGTTGTGTTATACTCCAATT GTGAGTCAGCTTCAGTCGCCGTCAGGGGAGACTGGGACTTTGCTTCGCATTTACACGTCC AGATTTGGTTGTCATGCTCGTATCATAGCGATTGATGTAGATGCTTGGCAATTTGGAGGA CAGATATTCATACCATGAAAAAAAAGAGGACAGATATTCATTCTTTGCGTCTTGCTCTTG CTTCTATATATATCTAGGAAACCAGAACTAGTCAAAATTTCAAACATGTGAAAAGATTAT TGGCTTCGCCCGGGTTCGAACCGGAGACCTTCAGTGTGTTAGACTGACGTGATAACCAA