- Transcript HORVU2Hr1G060680.20
- Transcript IDHORVU2Hr1G060680.20
- Gene IDHORVU2Hr1G060680
Barley RTD
Exon Structure of HORVU2Hr1G060680.20
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 405594564 | 405594464 | + |
| chr2H | 2 | 405594715 | 405594650 | + |
| chr2H | 3 | 405594916 | 405594845 | + |
| chr2H | 4 | 405595560 | 405595031 | + |
| chr2H | 5 | 405597614 | 405596793 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g05010.1 | +3 | 2e-69 | 229 | 140/245 (57%) | protein|helix-loop-helix DNA-binding domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g58230.1.p | +3 | 6e-94 | 291 | 169/246 (69%) | pacid=32794195 transcript=Bradi1g58230.1 locus=Bradi1g58230 ID=Bradi1g58230.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1591 bp)
>HORVU2Hr1G060680.20 1591 150831_barley_pseudomolecules CCGACGACTGTGAGGCCGTCAATGAGACCCGGCCGCAGCGGCCGGCAGCGAAGCGCAGGA CTCGTGCTGCCGAGGTCCATAACCAATCAGAGCGGGTAAAAAGAAGAAGGGATCGGATCA ACGAAAAGATGAAAGCATTGCAAGAACTCGTACCCCATTGCAACAAGAGCGACAAGGCGT CCATTCTAGACGAAGCAATCGAGTACTTGAAGTCTCTGCAACTGCAAGTTCAGGTTCAAT GGATGACTACTGGGATGACGCCCATGATGTACCCTGGTGCTCACCAACTCATGTCGCCGA TGGCCGTGGGCTTGAACTCAGCGTGCATTCCCACGGCGCAGAGCCTTAGCCAGCTGCAAA AAAGGGTAGCACCGTTTATGAACAATCATCTCCCCGATCAAATGCCTCAGGTCCAATCTC CAGCTATCGATTCCCTCGATGTGGCAAACCAGATGCAAAACAATGGTGTCTGTGGTGAGC CAAGAAACCCTTTCCTGCATCCAGACGACACGCTAACAGCGGCATCTCAGGTTATTACGA CACAGTTGATCTCCTCCTGATCTATCAGACTTTTACTCCTGTTAGCTTACGCTGTCGATT CCTCACAGCTTCCGGGTATGTTGCCCTATGCATCTCAAAAGGCACAACAAAACCAGAATC ATCAGTTACTGCCTAGCATAGACATGCCAGCTTCAGGACCCTGCCCGCCATCTTTTGCTG ACGGAACGGGAAAATAAGGCCAGGCAGTTTCAAGCAAGATGATTTACTGGGGGGTTGGAT ACAGGAGGTCAGAGCAAACTAGTCATAGAAGAGAAGAGATATGGTACCAAGACACTCTGT GCTGTAAGGCCAGGGGCAGATCATGCAACATTGAGCCTTGGTGGCACCACTAAGCAACCA ACACGTATGGGCCCGAGATCATGCGGAATTGCGGATAGCAGATACTATTCTTATCCGAAG AATAGTCTTGAGCACCACCTTTCTATTTATGGAAGGATTTGGTCCATGGGAGATGAACTT GGGGCTTTGACAGGGACAACAAAAGATGATTGTGCCGATATGCTGCAGATCTGGAGATGA CATTGTTGGAGCCAGGATCTGCACAATGACACAACTTGTGCACTTCTGCTCGTCTTTCCA CCGATGTAACTCCACTCCACTGGTGAGTCCTAATGGGACTGTCCTGTTGACCCGCGGTCG AGCTATCGATATTCGAATGGACGGCTGAAACAAGGGTAGGCAGAAGAAACTTGTGCTTTT CGGACACAATTGTAGATCAGGTTTGCATATGCCTTTCAGAAATTCAGACAAGTGGTACAT GAAGATCATTCTCATTCGGCCATCAGGATCGCGAGATTATCGCCTTACCCTTAACCCTGG AAAGATTGTACCGCATGTGGTGATGTCCTGTTACAAGTTAATCAGGACTGTGATGGGCAT CATCCGTTTCGTCACAGGGTAATTAGTCTCTGAAAATATCAATGATGCTGCATCTTTTGT TGTGTTATACTCCAATTGTGAGTCAGCTTCAGTCGCCGTCAGGGGAGACTGGGACTTTGC TTCGCATTTACACGTCCAGATTTGGTTGTCA