- Transcript HORVU2Hr1G060680.19
- Transcript IDHORVU2Hr1G060680.19
- Gene IDHORVU2Hr1G060680
Barley RTD
Exon Structure of HORVU2Hr1G060680.19
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 405594558 | 405594404 | + |
| chr2H | 2 | 405594715 | 405594650 | + |
| chr2H | 3 | 405594916 | 405594845 | + |
| chr2H | 4 | 405595560 | 405595031 | + |
| chr2H | 5 | 405596695 | 405596579 | + |
| chr2H | 6 | 405597700 | 405596803 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g05010.1 | +3 | 1e-73 | 243 | 149/265 (56%) | protein|helix-loop-helix DNA-binding domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g58230.1.p | +3 | 1e-101 | 314 | 180/264 (68%) | pacid=32794195 transcript=Bradi1g58230.1 locus=Bradi1g58230 ID=Bradi1g58230.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1838 bp)
>HORVU2Hr1G060680.19 1838 150831_barley_pseudomolecules CGCTACTGTTCAAGAGGGGGAGGGACCAACTGGATAGCCGCCGAGAGGACGAACTGGATA CCGACGACTGTGAGGCCGTCAATGAGACCCGGCCGCAGCGGCCGGCAGCGAAGCGCAGGA CTCGTGCTGCCGAGGTCCATAACCAATCAGAGCGGAGAAGAAGGGATCGGATCAACGAAA AGATGAAAGCATTGCAAGAACTCGTACCCCATTGCAACAAGAGCGACAAGGCGTCCATTC TAGACGAAGCAATCGAGTACTTGAAGTCTCTGCAACTGCAAGTTCAGGTTCAATGGATGA CTACTGGGATGACGCCCATGATGTACCCTGGTGCTCACCAACTCATGTCGCCGATGGCCG TGGGCTTGAACTCAGCGTGCATTCCCACGGCGCAGAGCCTTAGCCAGCTGCAAAAAAGGG TAGCACCGTTTATGAACAATCATCTCCCCGATCAAATGCCTCAGGTCCAATCTCCAGCTA TCGATTCCCTCGATGTGGCAAACCAGATGCAAAACAATGGTGTCTGTGGTGAGCCAAGAA ACCCTTTCCTGCATCCAGACGACACGCTAACAGCGGCATCTCAGGTTATTACGACACAGT TGATCTCCTCCTGATCTATCAGACTTTTACTCCTGTTAGCTTACGCTGTCGATTCCTCAC AGCTTCCGGGTATGTTGCCCTATGCATCTCAAAAGGCACAACAAAACCAGAATCATCAGT TACTGCCTAGCATAGACATGCCAGCTTCAGGACCCTGCCCGCCATCTTTTGCTGACGGAA CGGGAAAATAAGGCCAGGCAGTTTCAAGCAAGATGATTTACTGATTGGCCATCTATCTAT ATGATAATATAAGATGCCAAGGAAACTCAGACATGTCCTTCACATCCCTAACGAACGGCC AGAATATCACCTGGCATATATAACTCGCAGGTATTCCCAGTACAGGAGGTCAGAGCAAAC TAGTCATAGAAGAGAAGAGATATGGTACCAAGACACTCTGTGCTGTAAGGCCAGGGGCAG ATCATGCAACATTGAGCCTTGGTGGCACCACTAAGCAACCAACACGTATGGGCCCGAGAT CATGCGGAATTGCGGATAGCAGATACTATTCTTATCCGAAGAATAGTCTTGAGCACCACC TTTCTATTTATGGAAGGATTTGGTCCATGGGAGATGAACTTGGGGCTTTGACAGGGACAA CAAAAGATGATTGTGCCGATATGCTGCAGATCTGGAGATGACATTGTTGGAGCCAGGATC TGCACAATGACACAACTTGTGCACTTCTGCTCGTCTTTCCACCGATGTAACTCCACTCCA CTGGTGAGTCCTAATGGGACTGTCCTGTTGACCCGCGGTCGAGCTATCGATATTCGAATG GACGGCTGAAACAAGGGTAGGCAGAAGAAACTTGTGCTTTTCGGACACAATTGTAGATCA GGTTTGCATATGCCTTTCAGAAATTCAGACAAGTGGTACATGAAGATCATTCTCATTCGG CCATCAGGATCGCGAGATTATCGCCTTACCCTTAACCCTGGAAAGATTGTACCGCATGTG GTGATGTCCTGTTACAAGTTAATCAGGACTGTGATGGGCATCATCCGTTTCGTCACAGGG TAATTAGTCTCTGAAAATATCAATGATGCTGCATCTTTTGTTGTGTTATACTCCAATTGT GAGTCAGCTTCAGTCGCCGTCAGGGGAGACTGGGACTTTGCTTCGCATTTACACGTCCAG ATTTGGTTGTCATGCTCGTATCATAGCGATTGATGTAGATGCTTGGCAATTTGGAGGACA GATATTCATACCATGAAAAAAAAGAGGACAGATATTCA