Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G060680.16

ChromosomeExonStartStopDirection
chr2H1405594558405594359+
chr2H2405594715405594650+
chr2H3405594910405594845+
chr2H4405595321405595025+
chr2H5405595560405595400+
chr2H6405596686405596579+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os07g05010.1 +3 5e-84 259 150/239 (63%) protein|helix-loop-helix DNA-binding domain containing protein, expressed
TAIR PP10None-----
BRACH PP3 Bradi1g58230.1.p +3 5e-114 334 187/244 (77%) pacid=32794195 transcript=Bradi1g58230.1 locus=Bradi1g58230 ID=Bradi1g58230.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (898 bp)

>HORVU2Hr1G060680.16 898 150831_barley_pseudomolecules
CGGCGCTGCTGCCATCGCCGGGCTCGTCCGCAGCGGGAGGCCAAGCGCTACTGTTCAAGA
GGGGGAGGGACCAACTGGATAGCCGCCGAGAGGACGAACTGGATACCGACGACTGTGAGG
CCGTCAATGAGACCCGGCCGCAGCGGCCGGCAGCGAAGCGCAGGACTCGTGCTGCCGAGG
TCCATAACCAATCAGAGCGGAGAAGAAGGGATCGGATCAACGAAAAGATGAAAGCATTGC
AAGAACTCGTACCCCATTGCAACAAGAGCGACAAGGCGTCCATTCTAGACGAAGCAATCG
AGTACTTGAAGTCTCTGCAACTGCAAGTTCAGATCATGTGGATGACTACTGGGATGACGC
CCATGATGTACCCTGGTGCTCACCAACTCATGTCGCCGATGGCCGTGGGCTTGAACTCAG
CGTGCATTCCCACGGCGCAGAGCCTTAGCCAGCTGCAAAAAAGGGTAGCACCGTTTATGA
ACAATCATCTCCCCGATCAAATGCCTCAGGTCCAATCTCCAGCTATCGATTCCCTCGATG
TGGCAAACCAGATGCAAAACAATGGTGTCTGTGGTGAGCCAAGAAACCCTTTCCTGCATC
CAGACGACACGCTAACAGCGGCATCTCAGCTTCCGGGTATGTTGCCCTATGCATCTCAAA
AGGCACAACAAAACCAGAATCATCAGTTACTGCCTAGCATAGACATGCCAGCTTCAGGAC
CCTGCCCGCCATCTTTTGCTGACGGAACGGGAAAATAAGGCCAGGCAGTTTCAAGCAAGA
TGATTTACTGATTGGCCATCTATCTATATGATAATATAAGATGCCAAGGAAACTCAGACA
TGTCCTTCACATCCCTAACGAACGGCCAGAATATCACCTGGCATATATAACTCGCAGG