- Transcript HORVU2Hr1G060680.12
- Transcript IDHORVU2Hr1G060680.12
- Gene IDHORVU2Hr1G060680
Barley RTD
Exon Structure of HORVU2Hr1G060680.12
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 405594558 | 405594320 | + |
| chr2H | 2 | 405594722 | 405594650 | + |
| chr2H | 3 | 405594921 | 405594852 | + |
| chr2H | 4 | 405595321 | 405595036 | + |
| chr2H | 5 | 405595560 | 405595400 | + |
| chr2H | 6 | 405596685 | 405596579 | + |
| chr2H | 7 | 405597684 | 405596793 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g05010.1 | +3 | 2e-84 | 271 | 145/239 (61%) | protein|helix-loop-helix DNA-binding domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g58230.1.p | +3 | 2e-116 | 352 | 192/279 (69%) | pacid=32794195 transcript=Bradi1g58230.1 locus=Bradi1g58230 ID=Bradi1g58230.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1828 bp)
>HORVU2Hr1G060680.12 1828 150831_barley_pseudomolecules CCGGGACGAGCTTCTGCGGGAGCAACGCGGTGACGGCGCCGGCGCTGCTGCCATCGCCGG GCTCGTCCGCAGCGGGAGGCCAAGCGCTACTGTTCAAGAGGGGGAGGGACCAACTGGATA GCCGCCGAGAGGACGAACTGGATACCGACGACTGTGAGGCCGTCAATGAGACCCGGCCGC AGCGGCCGGCAGCGAAGCGCAGGACTCGTGCTGCCGAGGTCCATAACCAATCAGAGCGGA GAAGAAGGGATCGGATCAACGAAAAGATGAAAGCATTGCAAGAACTCGTACCCCATTGCA ACAAGGTACCAAAGGCGTCCATTCTAGACGAAGCAATCGAGTACTTGAAGTCTCTGCAAC TGCAAGTTCAGGTTCAAAATTCGACTACTGGGATGACGCCCATGATGTACCCTGGTGCTC ACCAACTCATGTCGCCGATGGCCGTGGGCTTGAACTCAGCGTGCATTCCCACGGCGCAGA GCCTTAGCCAGCTGCAAAAAAGGGTAGCACCGTTTATGAACAATCATCTCCCCGATCAAA TGCCTCAGGTCCAATCTCCAGCTATCGATTCCCTCGATGTGGCAAACCAGATGCAAAACA ATGGTGTCTGTGGTGAGCCAAGAAACCCTTTCCTGCATCCAGACGACACGCTAACAGCGG CATCTCAGCTTCCGGGTATGTTGCCCTATGCATCTCAAAAGGCACAACAAAACCAGAATC ATCAGTTACTGCCTAGCATAGACATGCCAGCTTCAGGACCCTGCCCGCCATCTTTTGCTG ACGGAACGGGAAAATAAGGCCAGGCAGTTTCAAGCAAGATGATTTACTGATTGGCCATCT ATCTATATGATAATATAAGATGCCAAGGAAACTCAGACATGTCCTTCACATCCCTAACGA ACGGCCAGAATATCACCTGGCATATATAACTCGCAGGGGGGTTGGATACAGGAGGTCAGA GCAAACTAGTCATAGAAGAGAAGAGATATGGTACCAAGACACTCTGTGCTGTAAGGCCAG GGGCAGATCATGCAACATTGAGCCTTGGTGGCACCACTAAGCAACCAACACGTATGGGCC CGAGATCATGCGGAATTGCGGATAGCAGATACTATTCTTATCCGAAGAATAGTCTTGAGC ACCACCTTTCTATTTATGGAAGGATTTGGTCCATGGGAGATGAACTTGGGGCTTTGACAG GGACAACAAAAGATGATTGTGCCGATATGCTGCAGATCTGGAGATGACATTGTTGGAGCC AGGATCTGCACAATGACACAACTTGTGCACTTCTGCTCGTCTTTCCACCGATGTAACTCC ACTCCACTGGTGAGTCCTAATGGGACTGTCCTGTTGACCCGCGGTCGAGCTATCGATATT CGAATGGACGGCTGAAACAAGGGTAGGCAGAAGAAACTTGTGCTTTTCGGACACAATTGT AGATCAGGTTTGCATATGCCTTTCAGAAATTCAGACAAGTGGTACATGAAGATCATTCTC ATTCGGCCATCAGGATCGCGAGATTATCGCCTTACCCTTAACCCTGGAAAGATTGTACCG CATGTGGTGATGTCCTGTTACAAGTTAATCAGGACTGTGATGGGCATCATCCGTTTCGTC ACAGGGTAATTAGTCTCTGAAAATATCAATGATGCTGCATCTTTTGTTGTGTTATACTCC AATTGTGAGTCAGCTTCAGTCGCCGTCAGGGGAGACTGGGACTTTGCTTCGCATTTACAC GTCCAGATTTGGTTGTCATGCTCGTATCATAGCGATTGATGTAGATGCTTGGCAATTTGG AGGACAGATATTCATACCATGAAAAAAA