- Transcript HORVU2Hr1G040400.1
- Transcript IDHORVU2Hr1G040400.1
- Gene IDHORVU2Hr1G040400
Barley RTD
Exon Structure of HORVU2Hr1G040400.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 196025377 | 196024300 | + |
| chr2H | 2 | 196025614 | 196025518 | + |
| chr2H | 3 | 196026644 | 196026470 | + |
| chr2H | 4 | 196027861 | 196027791 | + |
| chr2H | 5 | 196028161 | 196028087 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g37610.1 | +3 | 0.0 | 561 | 287/396 (72%) | protein|B3 DNA binding domain containing protein, putative, expressed |
| TAIR PP10 | AT4G32010 @ ARAPORT AT4G32010.1 @ TAIR |
+3 | 1e-74 | 250 | 117/151 (77%) | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780 |
| BRACH PP3 | Bradi1g24720.3.p | +3 | 0.0 | 620 | 317/432 (73%) | pacid=32795971 transcript=Bradi1g24720.3 locus=Bradi1g24720 ID=Bradi1g24720.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1496 bp)
>HORVU2Hr1G040400.1 1496 150831_barley_pseudomolecules TTGCTGAAGAAATCATTCCGAGCACTCATGACGACGGGAGTNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNCAGGTAGCTTTGTCAATTTCTTGTGTTCTGTGAGTTCAT GTTCTACCTCGTTGATGCTAATGTTCTTATGCTGTTAGGCACCAAGTCAGATGTGGTCAA CTCCTACTGTGCATATGCCTCAAAATGTTGCTGACAGAAAGGACAGTTATGTAAAGAGTT GGAGACCTCCTGCGGGCCAGATTTCAAGTCAGTGGCGACAGAATCACCAGCTGTGGAACA TGTCCAGTATACAGACGGACTTGCAGCAACGTCTAGCTTATGAGTTTGATAGGCCAAGTG GCAGTGAAAAATTACCTCCAGGGCGCACTTTTATTCATGCCCAGGAAAAGAAATCCGATG ACATGCATGACAGACCAACGACACCTGCCGGCATGGGCCAGATTATAAGGGACAGATATG CCAATGGGCTCGGACAGCAAACAAACATGGATCCGACACACTCCTCTACGCCCTACCAGA GAGAAGGACCAAATCAAAATAGCCTTCATGATCCTAGTCACCATGTAGGAGAAAGTGACC CTTTGTCTTCAAGGAAAGGGATAGTTTCAGATGGTGGTTCTACTGCATCTACTGGCTTTA AGCTTGATCCACATCATCCATCCATTCTAAAGGATGATGCGGCATCAACCCTGCCGACAA TGGGTGGCTACACTATCACTAATTATCCACCGGTACCTGGACGAAGCGACCATCTCAGAA TCATACCTAATAATCCGCAACAACCACCCACCACGGTGCCCGTCTCAGTAGTGCAGAAAC AGTTCTATTCCCATAGTGTCATTGAGCCCGACTACCAAGCGCAATTCCGTAATGGAAAGC CCAGAATGGAGTCCAGAATGGATGCAAAGGCGAGATCTCAATTACTTCCCCGCTACTGGC CTAGAATAACAGATAAAGAGCTACAGCACTTATCGGGAGAGTATCCAAAAAACTCTACTT CGAATTCTGTTATTACTCCTTTGTTCGAGAAAATGTTAAGTGCCAGTGATGCTGGTCGGA TTGGTCGTTTGGTGTTGCCAAAGAAATGCGCCGAGGCATACTTCCCCCCAATCTCTCAGC CAGAAGGACTTCCCTTAAAAGTTCAGGATGCCAGTGGTAAGGAATGGGTGTTCCAGTTCC GTTTCTGGCCCAATAATAACAGCAGGATGTATGTATTGGAGGGTGTCACACCTTGCATTC AGTCGATGCACTTACAAGCGGGCGATACAGTAAGTTTCAGCCGAATAGATCCAGAAGGGA AGCTGGTCATGGGATTCAGAAAGACAAAGACTCAAGAACAGTTGTTCTGCCGNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN