- Transcript HORVU2Hr1G013400.8
- Transcript IDHORVU2Hr1G013400.8
- Gene IDHORVU2Hr1G013400
Barley RTD
Exon Structure of HORVU2Hr1G013400.8
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29123857 | 29123746 | + |
| chr2H | 2 | 29124217 | 29123960 | + |
| chr2H | 3 | 29124505 | 29124321 | + |
| chr2H | 4 | 29124781 | 29124617 | + |
| chr2H | 5 | 29124992 | 29124859 | + |
| chr2H | 6 | 29125344 | 29125189 | + |
| chr2H | 7 | 29125971 | 29125786 | + |
| chr2H | 8 | 29127230 | 29126067 | + |
| chr2H | 9 | 29127759 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +3 | 2e-139 | 340 | 189/255 (74%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+3 | 1e-60 | 220 | 134/259 (52%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g65910.4.p | +3 | 2e-113 | 295 | 174/286 (61%) | pacid=32794230 transcript=Bradi1g65910.4 locus=Bradi1g65910 ID=Bradi1g65910.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2790 bp)
>HORVU2Hr1G013400.8 2790 150831_barley_pseudomolecules CTCCCACACCCACCCACACACACAGCACACCCTCCTCGGCTCGACTCGACTCGCCGCCGC CGCCGCAGTCCATGGCCTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCAAGGGCACGCT CAGGCTCTCTCTAGCTGCTGCTAATAGTATGTGTCCGGAAATTGCTGGAGATTAACCGGC TCGCACGCCTTGTCTGCTACTGCCCCCCCTTATAGCCGCCGGCAGCTCCATTCCAGGAGA CGATTCATTCCGCTGCAGTCTCAACCCCCTTGCTCTTGTGTGTTTTTTTTGCGTTTTGTT TTTATTGGTTTGGTCCGCTGCTCCGCCGCCGTCGACGACGAACGCCGTGGGACTCCCGGA TGCGACCGAGGCAGCCTCCTCCTAGCGCCATGGACAATCAGCAGCAGCAGCAGCCGCCGC GCGGGGAGCACGCCGCCCAGCCGCGATGCTGGGAGGAGTTCCTACACAGGAAGACCATCC GGGTCCTGCTCGTGGAGACCGACGACTCCACCAGGCAGGTCGTCGCCGCCCTGCTCCGCC ACTGCATGTACCAAGTTATCCCCGTCGAGAACGGCCACCAGGCGTGGGCGTATCTTCAGG ACATGCAGAGCAACATCGACCTTGTTCTCACAGAGGTGTTCATGCACGGCGGCCTCTCCG GGATCGACCTGCTCGGCAGGATCATGAACCACGAGGTCTGCAAGGACATCCCCGTCATCA TGATGTCGTCGCACGATTCCATGGGCACCGTCCTCAGCTGCCTCTCAAATGGTGCTGCTG ACTTCTTGGCCAAGCCGATACGTAAGAACGAGCTTAAGAACCTTTGGGCGCATGTGTGGC GACGGTCTCACAGCTCCAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGTA CCAAATCAAAGAGCGGCGATGATTCCAATAACAACAGCAATGATCGCAACGACGATGCCA GCATGGGGCTCAATGCAAGGGATGGCAGCGATAATGGCAGTGGCACTCAGAGCTCATGGA CAAAGCGTGCCGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGATC CCCCTGAAGGCACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGAT GGTTACCAGGTACAAATAACAAAAAATGCCAGAAACCAAAAGAAACCACTAATGGTGTGA TGGATTCAAAGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGATCA ATCCTCCCCGAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTGCCACA GAACAATTCCAGTGATACGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCTGA CTTAATCGGTTCGATGGCCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCATAGA TGCTCCTAACTGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCTAT GCCATATCTTGAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGAT CCAGGAGGAACAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTGCAA AGCATAATATCAGTGTCCTTTGTGAATCCTGAAATCATCCGTATGTTGCATACTAACCGT TTTCATTCTTTGCAAGGTACAATATGTGTGCGGTCTCCAATCAAGGCGGGGCAGGGTTCG TCGGGAGCTGCTCACCCAACGGCGACAGCTCCGAGGCCGCGAAAACGGTTGCTGCTCAGA TGAAGCAGGGCTCTAACGGCAGCAGCAACAACAATGACATGGGCTCCACCACGAAGAGCG TGGTGACCAAGCCCTGTGGAAATAATAAGGTTTCGCCCATCAACGGCAACACACACACGT CGGCGTTTCATCGTGTGCAGCCATGGACGCCAGCGACAGCAGCAGGAAAAGACAAGGCTG ATGAAGTGAGCAAGAAGAACGTTGCAGCAGCAGCAGCAGCAGCGAAAGAAATGGGTTGTG AAGCACAGAGCAAACACCCCTGTGCAGCGGCCGATGACGTGAATGGTGGATCGGCAGGAG GCACTGCTCAGTCCAGTGTTGTCAATCCTTCGGGTCCGGTTGAAGGCCATACTGCCAACT ATGGTAGCAACTCATTCAGCAATAACAACACCAATAACGGGAGCACCGCAGCTACCACTG CTGCTGCTGCTGCTGTACATGCTGAGACCGGTGGTGGCGTCGACAAAAGAAGTAACATGA TGAACATGAAACGGGAGCGCCGTGTGGCCGCCGTGAACAAGTTCAGAGAGAAGAGAAAAG AGAGGAACTTCGGGAAGAAGGTGCGTTACCAGAGCAGGAAGCGGCTGGCCGAGCAGCGCC CACGGGTGCGCTGGCAGTTCGTGCGGCAGCCGCCGGCGCCGGCGACCGTGGAGAGATAAC CTCCCGCCACGCACCTAGCTATACCTAGTACTCTACTAATTAGACAGCTGATTCTTGTGT CTTTGGCCATGGATCATTGGGAGCTCGTCTCATCTCCTGGAAGAAGAAGAATAACGAGTG ACTCCTCCTGCCTGCCTTAGCGACCTACCATAGAACATGCCGGCGGAGGAGGACGAGGGC GATTGTACATAGTAGGAGCGTGTGGAGCCGATCAGACAGGCTCCCGCTCTTGAATGTAGC AGCAATTGACCAATCAATGTCTGAGCCTCTAGAATGGTAGTATGAGTGAGTATTGTGCTG TACACTTGTCATCAGCTTGGCCATGGCGGC