- Transcript HORVU2Hr1G013400.40
- Transcript IDHORVU2Hr1G013400.40
- Gene IDHORVU2Hr1G013400
Barley RTD
Exon Structure of HORVU2Hr1G013400.40
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29127353 | 29126080 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +2 | 3e-46 | 171 | 100/144 (69%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g16490.4.p | +2 | 3e-92 | 179 | 100/136 (74%) | pacid=32803661 transcript=Bradi1g16490.4 locus=Bradi1g16490 ID=Bradi1g16490.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1274 bp)
>HORVU2Hr1G013400.40 1274 150831_barley_pseudomolecules AGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGATCAATCCTCCCC GAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTGCCACAGAACAATTC CAGTGATACGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCTGACTTAATCGG TTCGATGGCCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCATAGATGCTCCTAA CTGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCTATGCCATATCT TGAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGATCCAGGAGGA ACAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTGCAAAGCATAATA TCAGTGTCCTTTGTGAATCCTGAAATCATCCGTATGTTGCATACTAACCGTTTTCATTCT TTGCAAGGTACAATATGTGTGCGGTCTCCAATCAAGGCGGGGCAGGGTTCGTCGGGAGCT GCTCACCCAACGGCGACAGCTCCGAGGCCGCGAAAACGGTTGCTGCTCAGATGAAGCAGG GCTCTAACGGCAGCAGCAACAACAATGACATGGGCTCCACCACGAAGAGCGTGGTGACCA AGCCCTGTGGAAATAATAAGGTTTCGCCCATCAACGGCAACACACACACGTCGGCGTTTC ATCGTGTGCAGCCATGGACGCCAGCGACAGCAGCAGGAAAAGACAAGGCTGATGAAGTGA GCAAGAAGAACGTTGCAGCAGCAGCAGCAGCAGCGAAAGAAATGGGTTGTGAAGCACAGA GCAAACACCCCTGTGCAGCGGCCGATGACGTGAATGGTGGATCGGCAGGAGGCACTGCTC AGTCCAGTGTTGTCAATCCTTCGGGTCCGGTTGAAGGCCATACTGCCAACTATGGTAGCA ACTCATTCAGCAATAACAACACCAATAACGGGAGCACCGCAGCTACCACTGCTGCTGCTG CTGCTGTACATGCTGAGACCGGTGGTGGCGTCGACAAAAGAAGTAACATGATGAACATGA AACGGGAGCGCCGTGTGGCCGCCGTGAACAAGTTCAGAGAGAAGAGAAAAGAGAGGAACT TCGGGAAGAAGGTACTAGGTTTTTCCCTAGAGCGGTCTCGTGTGTCCTCTGTTCTTCATT TCATTCTTCTTATTGGGGGTTCGTTTCTGAATGGGTCGTTCGTTTTGCAGGTGCGTTACC AGAGCAGGAAGCGG