- Transcript HORVU2Hr1G013400.39
- Transcript IDHORVU2Hr1G013400.39
- Gene IDHORVU2Hr1G013400
Barley RTD
Exon Structure of HORVU2Hr1G013400.39
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29125344 | 29125190 | + |
| chr2H | 2 | 29125924 | 29125780 | + |
| chr2H | 3 | 29126484 | 29126067 | + |
| chr2H | 4 | 29127230 | 29126567 | + |
| chr2H | 5 | 29127785 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +3 | 4e-139 | 423 | 308/538 (57%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g16490.4.p | +3 | 1e-180 | 521 | 353/513 (69%) | pacid=32803661 transcript=Bradi1g16490.4 locus=Bradi1g16490 ID=Bradi1g16490.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1838 bp)
>HORVU2Hr1G013400.39 1838 150831_barley_pseudomolecules CCAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGTACCAAATCAAAGAGCG GCGATGATTCCAATAACAACAGCAATGATCGCAACGACGATGCCAGCATGGGGCTCAATG CAAGGGATGGCAGCGATAATGGCAGTGGCACTCAGGCGCAGAGCTCATGGACAAAGCGTG CCGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGATCCCCCTGAAG GCACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGATGGTTACCAG GTGATGGATTCAAAGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACG ATCAATCCTCCCCGAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTGC CACAGAACAATTCCAGTGATACGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTG CTGACTTAATCGGTTCGATGGCCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCA TAGATGCTCCTAACTGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACG CTATGCCATATCTTGAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCC CGATCCAGGAGGAACAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGT ACAATATGTGTGCGGTCTCCAATCAAGGCGGGGCAGGGTTCGTCGGGAGCTGCTCACCCA ACGGCGACAGCTCCGAGGCCGCGAAAACGGTTGCTGCTCAGATGAAGCAGGGCTCTAACG GCAGCAGCAACAACAATGACATGGGCTCCACCACGAAGAGCGTGGTGACCAAGCCCTGTG GAAATAATAAGGTTTCGCCCATCAACGGCAACACACACACGTCGGCGTTTCATCGTGTGC AGCCATGGACGCCAGCGACAGCAGCAGGAAAAGACAAGGCTGATGAAGTGAGCAAGAAGA ACGTTGCAGCAGCAGCAGCAGCAGCGAAAGAAATGGGTTGTGAAGCACAGAGCAAACACC CCTGTGCAGCGGCCGATGACGTGAATGGTGGATCGGCAGGAGGCACTGCTCAGTCCAGTG TTGTCAATCCTTCGGGTCCGGTTGAAGGCCATACTGCCAACTATGGTAGCAACTCATTCA GCAATAACAACACCAATAACGGGAGCACCGCAGCTACCACTGCTGCTGCTGCTGCTGTAC ATGCTGAGACCGGTGGTGGCGTCGACAAAAGAAGTAACATGATGAACATGAAACGGGAGC GCCGTGTGGCCGCCGTGAACAAGTTCAGAGAGAAGAGAAAAGAGAGGAACTTCGGGAAGA AGGTGCGTTACCAGAGCAGGAAGCGGCTGGCCGAGCAGCGCCCACGGGTGCGCTGGCAGT TCGTGCGGCAGCCGCCGGCGCCGGCGACCGTGGAGAGATAACCTCCCGCCACGCACCTAG CTATACCTAGTACTCTACTAATTAGACAGCTGATTCTTGTGTCTTTGGCCATGGATCATT GGGAGCTCGTCTCATCTCCTGGAAGAAGAAGAATAACGAGTGACTCCTCCTGCCTGCCTT AGCGACCTACCATAGAACATGCCGGCGGAGGAGGACGAGGGCGATTGTACATAGTAGGAG CGTGTGGAGCCGATCAGACAGGCTCCCGCTCTTGAATGTAGCAGCAATTGACCAATCAAT GTCTGAGCCTCTAGAATGGTAGTATGAGTGAGTATTGTGCTGTACACTTGTCATCAGCTT GGCCATGGCGGCAGCCTTGTCAGGTGTCATCAATCAAC