- Transcript HORVU2Hr1G013400.38
- Transcript IDHORVU2Hr1G013400.38
- Gene IDHORVU2Hr1G013400
Barley RTD
Exon Structure of HORVU2Hr1G013400.38
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29125344 | 29125190 | + |
| chr2H | 2 | 29125969 | 29125780 | + |
| chr2H | 3 | 29126484 | 29126067 | + |
| chr2H | 4 | 29127230 | 29126567 | + |
| chr2H | 5 | 29127785 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +3 | 1e-144 | 438 | 314/540 (58%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g16490.4.p | +3 | 0.0 | 540 | 361/519 (70%) | pacid=32803661 transcript=Bradi1g16490.4 locus=Bradi1g16490 ID=Bradi1g16490.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1883 bp)
>HORVU2Hr1G013400.38 1883 150831_barley_pseudomolecules CCAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGTACCAAATCAAAGAGCG GCGATGATTCCAATAACAACAGCAATGATCGCAACGACGATGCCAGCATGGGGCTCAATG CAAGGGATGGCAGCGATAATGGCAGTGGCACTCAGGCGCAGAGCTCATGGACAAAGCGTG CCGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGATCCCCCTGAAG GCACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGATGGTTACCAG GTACAAATAACAAAAAATGCCAGAAACCAAAAGAAACCACTAATGGTGATGGATTCAAAG GCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGATCAATCCTCCCCGA ACGAGAGTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTGCCACAGAACAATTCCA GTGATACGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCTGACTTAATCGGTT CGATGGCCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCATAGATGCTCCTAACT GCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCTATGCCATATCTTG AGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGATCCAGGAGGAAC AGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTACAATATGTGTGCGG TCTCCAATCAAGGCGGGGCAGGGTTCGTCGGGAGCTGCTCACCCAACGGCGACAGCTCCG AGGCCGCGAAAACGGTTGCTGCTCAGATGAAGCAGGGCTCTAACGGCAGCAGCAACAACA ATGACATGGGCTCCACCACGAAGAGCGTGGTGACCAAGCCCTGTGGAAATAATAAGGTTT CGCCCATCAACGGCAACACACACACGTCGGCGTTTCATCGTGTGCAGCCATGGACGCCAG CGACAGCAGCAGGAAAAGACAAGGCTGATGAAGTGAGCAAGAAGAACGTTGCAGCAGCAG CAGCAGCAGCGAAAGAAATGGGTTGTGAAGCACAGAGCAAACACCCCTGTGCAGCGGCCG ATGACGTGAATGGTGGATCGGCAGGAGGCACTGCTCAGTCCAGTGTTGTCAATCCTTCGG GTCCGGTTGAAGGCCATACTGCCAACTATGGTAGCAACTCATTCAGCAATAACAACACCA ATAACGGGAGCACCGCAGCTACCACTGCTGCTGCTGCTGCTGTACATGCTGAGACCGGTG GTGGCGTCGACAAAAGAAGTAACATGATGAACATGAAACGGGAGCGCCGTGTGGCCGCCG TGAACAAGTTCAGAGAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAGGTGCGTTACCAGA GCAGGAAGCGGCTGGCCGAGCAGCGCCCACGGGTGCGCTGGCAGTTCGTGCGGCAGCCGC CGGCGCCGGCGACCGTGGAGAGATAACCTCCCGCCACGCACCTAGCTATACCTAGTACTC TACTAATTAGACAGCTGATTCTTGTGTCTTTGGCCATGGATCATTGGGAGCTCGTCTCAT CTCCTGGAAGAAGAAGAATAACGAGTGACTCCTCCTGCCTGCCTTAGCGACCTACCATAG AACATGCCGGCGGAGGAGGACGAGGGCGATTGTACATAGTAGGAGCGTGTGGAGCCGATC AGACAGGCTCCCGCTCTTGAATGTAGCAGCAATTGACCAATCAATGTCTGAGCCTCTAGA ATGGTAGTATGAGTGAGTATTGTGCTGTACACTTGTCATCAGCTTGGCCATGGCGGCAGC CTTGTCAGGTGTCATCAATCAAC