- Transcript HORVU2Hr1G013400.36
- Transcript IDHORVU2Hr1G013400.36
- Gene IDHORVU2Hr1G013400
Barley RTD
Exon Structure of HORVU2Hr1G013400.36
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29124505 | 29124373 | + |
| chr2H | 2 | 29124781 | 29124617 | + |
| chr2H | 3 | 29124992 | 29124859 | + |
| chr2H | 4 | 29125344 | 29125169 | + |
| chr2H | 5 | 29125951 | 29125786 | + |
| chr2H | 6 | 29126484 | 29126067 | + |
| chr2H | 7 | 29127230 | 29126567 | + |
| chr2H | 8 | 29127428 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +3 | 4e-180 | 424 | 310/538 (58%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+1 | 4e-49 | 183 | 88/133 (66%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g16490.4.p | +3 | 0.0 | 546 | 359/511 (70%) | pacid=32803661 transcript=Bradi1g16490.4 locus=Bradi1g16490 ID=Bradi1g16490.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1955 bp)
>HORVU2Hr1G013400.36 1955 150831_barley_pseudomolecules GGGGAGCACGCCGCCCAGCCGCGATGCTGGGAGGAGTTCCTACACAGGAAGACCATCCGG GTCCTGCTCGTGGAGACCGACGACTCCACCAGGCAGGTCGTCGCCGCCCTGCTCCGCCAC TGCATGTACCAAGTTATCCCCGTCGAGAACGGCCACCAGGCGTGGGCGTATCTTCAGGAC ATGCAGAGCAACATCGACCTTGTTCTCACAGAGGTGTTCATGCACGGCGGCCTCTCCGGG ATCGACCTGCTCGGCAGGATCATGAACCACGAGGTCTGCAAGGACATCCCCGTCATCATG ATGTCGTCGCACGATTCCATGGGCACCGTCCTCAGCTGCCTCTCAAATGGTGCTGCTGAC TTCTTGGCCAAGCCGATACGTAAGAACGAGCTTAAGAACCTTTGGGCGCATGTGTGGCGA CGGTCTCACAGCGTTGTTTTCTTGGAACTCAGTCCAGTGGCAGTGGTAGTGGAAGTGCCA TTCAGACTCAGAAGTGTACCAAATCAAAGAGCGGCGATGATTCCAATAACAACAGCAATG ATCGCAACGACGATGCCAGCATGGGGCTCAATGCAAGGGATGGCAGCGATAATGGCAGTG GCACTCAGAGCTCATGGACAAAGCGTGCCGTTGAGATCGACAGTCCCCAGGACATGTCTC CGGATCAGTCAGCCGATCCCCCTGAAGGCACTTGTGCCCATGTGAACCATCCCAAGTCAG AGATATGCAGCAATAGATGGTTACCAGGTACAAATAACAAAAAATGCCAGAAACGTGATG GATTCAAAGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGATCAAT CCTCCCCGAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTGCCACAGA ACAATTCCAGTGATACGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCTGACT TAATCGGTTCGATGGCCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCATAGATG CTCCTAACTGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCTATGC CATATCTTGAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGATCC AGGAGGAACAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTACAATA TGTGTGCGGTCTCCAATCAAGGCGGGGCAGGGTTCGTCGGGAGCTGCTCACCCAACGGCG ACAGCTCCGAGGCCGCGAAAACGGTTGCTGCTCAGATGAAGCAGGGCTCTAACGGCAGCA GCAACAACAATGACATGGGCTCCACCACGAAGAGCGTGGTGACCAAGCCCTGTGGAAATA ATAAGGTTTCGCCCATCAACGGCAACACACACACGTCGGCGTTTCATCGTGTGCAGCCAT GGACGCCAGCGACAGCAGCAGGAAAAGACAAGGCTGATGAAGTGAGCAAGAAGAACGTTG CAGCAGCAGCAGCAGCAGCGAAAGAAATGGGTTGTGAAGCACAGAGCAAACACCCCTGTG CAGCGGCCGATGACGTGAATGGTGGATCGGCAGGAGGCACTGCTCAGTCCAGTGTTGTCA ATCCTTCGGGTCCGGTTGAAGGCCATACTGCCAACTATGGTAGCAACTCATTCAGCAATA ACAACACCAATAACGGGAGCACCGCAGCTACCACTGCTGCTGCTGCTGCTGTACATGCTG AGACCGGTGGTGGCGTCGACAAAAGAAGTAACATGATGAACATGAAACGGGAGCGCCGTG TGGCCGCCGTGAACAAGTTCAGAGAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAGGTGC GTTACCAGAGCAGGAAGCGGCTGGCCGAGCAGCGCCCACGGGTGCGCTGGCAGTTCGTGC GGCAGCCGCCGGCGCCGGCGACCGTGGAGAGATAA