- Transcript HORVU2Hr1G013400.3
- Transcript IDHORVU2Hr1G013400.3
- Gene IDHORVU2Hr1G013400
Barley RTD
Exon Structure of HORVU2Hr1G013400.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29124217 | 29123727 | + |
| chr2H | 2 | 29124505 | 29124321 | + |
| chr2H | 3 | 29124781 | 29124617 | + |
| chr2H | 4 | 29124992 | 29124859 | + |
| chr2H | 5 | 29125344 | 29125189 | + |
| chr2H | 6 | 29125974 | 29125780 | + |
| chr2H | 7 | 29126174 | 29126067 | + |
| chr2H | 8 | 29127230 | 29126291 | + |
| chr2H | 9 | 29127831 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +1 | 3e-130 | 411 | 248/405 (61%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+1 | 5e-61 | 221 | 172/418 (41%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g16490.7.p | +1 | 0.0 | 428 | 256/406 (63%) | pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2876 bp)
>HORVU2Hr1G013400.3 2876 150831_barley_pseudomolecules CTCCGCCCCCCTCCCTCGCCTCCCACACCCACCCACACACACAGCACACCCTCCTCGGCT CGACTCGACTCGCCGCCGCCGCCGCAGTCCATGGCCTCGTCGTCCTCCTCCTGACCGGCA GCAGACCCAAGGTGCGCTCCCGCCCGTCTATGGTCACCCACGCGCTCTGTTTCCGCTCGA TTGGGGGATCGAATCACCCGTTTCAATCTCAATCTACGTGCGTGTGGATCCAGGGCACGC TCAGGCTCTCTCTAGCTGCTGCTAATAGTATGTGTCCGGAAATTGCTGGAGATTAACCGG CTCGCACGCCTTGTCTGCTACTGCCCCCCCTTATAGCCGCCGGCAGCTCCATTCCAGGAG ACGATTCATTCCGCTGCAGTCTCAACCCCCTTGCTCTTGTGTGTTTTTTTTGCGTTTTGT TTTTATTGGTTTGGTCCGCTGCTCCGCCGCCGTCGACGACGAACGCCGTGGGACTCCCGG ATGCGACCGAGGCAGCCTCCTCCTAGCGCCATGGACAATCAGCAGCAGCAGCAGCCGCCG CGCGGGGAGCACGCCGCCCAGCCGCGATGCTGGGAGGAGTTCCTACACAGGAAGACCATC CGGGTCCTGCTCGTGGAGACCGACGACTCCACCAGGCAGGTCGTCGCCGCCCTGCTCCGC CACTGCATGTACCAAGTTATCCCCGTCGAGAACGGCCACCAGGCGTGGGCGTATCTTCAG GACATGCAGAGCAACATCGACCTTGTTCTCACAGAGGTGTTCATGCACGGCGGCCTCTCC GGGATCGACCTGCTCGGCAGGATCATGAACCACGAGGTCTGCAAGGACATCCCCGTCATC ATGATGTCGTCGCACGATTCCATGGGCACCGTCCTCAGCTGCCTCTCAAATGGTGCTGCT GACTTCTTGGCCAAGCCGATACGTAAGAACGAGCTTAAGAACCTTTGGGCGCATGTGTGG CGACGGTCTCACAGCTCCAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGT ACCAAATCAAAGAGCGGCGATGATTCCAATAACAACAGCAATGATCGCAACGACGATGCC AGCATGGGGCTCAATGCAAGGGATGGCAGCGATAATGGCAGTGGCACTCAGGCGCAGAGC TCATGGACAAAGCGTGCCGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAGTCA GCCGATCCCCCTGAAGGCACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGCAGC AATAGATGGTTACCAGGTACAAATAACAAAAAATGCCAGAAACCAAAAGAAACCACTAAT GGTATGGTGATGGATTCAAAGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACA CAGACGATCAATCCTCCCCGAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGCAGCA GCTAGAGCCATAGATGCTCCTAACTGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGAC GGCGAGAACGCTATGCCATATCTTGAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAA GGTGCAGGCCCGATCCAGGAGGAACAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCA TTCACGAGGTGCAAAGCATAATATCAGTGTCCTTTGTGAATCCTGAAATCATCCGTATGT TGCATACTAACCGTTTTCATTCTTTGCAAGGTACAATATGTGTGCGGTCTCCAATCAAGG CGGGGCAGGGTTCGTCGGGAGCTGCTCACCCAACGGCGACAGCTCCGAGGCCGCGAAAAC GGTTGCTGCTCAGATGAAGCAGGGCTCTAACGGCAGCAGCAACAACAATGACATGGGCTC CACCACGAAGAGCGTGGTGACCAAGCCCTGTGGAAATAATAAGGTTTCGCCCATCAACGG CAACACACACACGTCGGCGTTTCATCGTGTGCAGCCATGGACGCCAGCGACAGCAGCAGG AAAAGACAAGGCTGATGAAGTGAGCAAGAAGAACGTTGCAGCAGCAGCAGCAGCAGCGAA AGAAATGGGTTGTGAAGCACAGAGCAAACACCCCTGTGCAGCGGCCGATGACGTGAATGG TGGATCGGCAGGAGGCACTGCTCAGTCCAGTGTTGTCAATCCTTCGGGTCCGGTTGAAGG CCATACTGCCAACTATGGTAGCAACTCATTCAGCAATAACAACACCAATAACGGGAGCAC CGCAGCTACCACTGCTGCTGCTGCTGCTGTACATGCTGAGACCGGTGGTGGCGTCGACAA AAGAAGTAACATGATGAACATGAAACGGGAGCGCCGTGTGGCCGCCGTGAACAAGTTCAG AGAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAGGTGCGTTACCAGAGCAGGAAGCGGCT GGCCGAGCAGCGCCCACGGGTGCGCTGGCAGTTCGTGCGGCAGCCGCCGGCGCCGGCGAC CGTGGAGAGATAACCTCCCGCCACGCACCTAGCTATACCTAGTACTCTACTAATTAGACA GCTGATTCTTGTGTCTTTGGCCATGGATCATTGGGAGCTCGTCTCATCTCCTGGAAGAAG AAGAATAACGAGTGACTCCTCCTGCCTGCCTTAGCGACCTACCATAGAACATGCCGGCGG AGGAGGACGAGGGCGATTGTACATAGTAGGAGCGTGTGGAGCCGATCAGACAGGCTCCCG CTCTTGAATGTAGCAGCAATTGACCAATCAATGTCTGAGCCTCTAGAATGGTAGTATGAG TGAGTATTGTGCTGTACACTTGTCATCAGCTTGGCCATGGCGGCAGCCTTGTCAGGTGTC ATCAATCAACGCATATTTGTGGTTTCTTTCTAGTTACCGGGCAGACATCATCATCG