Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G013400.23

ChromosomeExonStartStopDirection
chr2H12912385729123762+
chr2H22912450529124063+
chr2H32912478129124617+
chr2H42912499229124859+
chr2H52912534429125189+
chr2H62912592429125786+
chr2H72912617429126067+
chr2H82912723029126291+
chr2H92912776029127330+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os07g49460.2 +2 7e-115 368 207/287 (72%) protein|response regulator receiver domain containing protein, expressed
TAIR PP10 AT5G02810 @ ARAPORT
AT5G02810.1 @ TAIR		 +2 2e-61 221 132/249 (53%) Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727
BRACH PP3 Bradi1g16490.7.p +2 2e-121 382 213/293 (73%) pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2612 bp)

>HORVU2Hr1G013400.23 2612 150831_barley_pseudomolecules
CACACACAGCACACCCTCCTCGGCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATGGC
CTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCAAGCCGCCGGCAGCTCCATTCCAGGAG
ACGATTCATTCCGCTGCAGTCTCAACCCCCTTGCTCTTGTGTGTTTTTTTTGCGTTTTGT
TTTTATTGGTTTGGTCCGCTGCTCCGCCGCCGTCGACGACGAACGCCGTGGGACTCCCGG
ATGCGACCGAGGTTCGACTGTCATTCACGGCCCTATTGCTTGCTGTTGCTGCTGGCTCCT
GCCTCCGCGTCAACCACCACCAAACGACCCCAACATGTTTCCTCTTGGAGCCAGGCAGCC
TCCTCCTAGCGCCATGGACAATCAGCAGCAGCAGCAGCCGCCGCGCGGGGAGCACGCCGC
CCAGCCGCGATGCTGGGAGGAGTTCCTACACAGGAAGACCATCCGGGTCCTGCTCGTGGA
GACCGACGACTCCACCAGGCAGGTCGTCGCCGCCCTGCTCCGCCACTGCATGTACCAAGT
TATCCCCGTCGAGAACGGCCACCAGGCGTGGGCGTATCTTCAGGACATGCAGAGCAACAT
CGACCTTGTTCTCACAGAGGTGTTCATGCACGGCGGCCTCTCCGGGATCGACCTGCTCGG
CAGGATCATGAACCACGAGGTCTGCAAGGACATCCCCGTCATCATGATGTCGTCGCACGA
TTCCATGGGCACCGTCCTCAGCTGCCTCTCAAATGGTGCTGCTGACTTCTTGGCCAAGCC
GATACGTAAGAACGAGCTTAAGAACCTTTGGGCGCATGTGTGGCGACGGTCTCACAGCTC
CAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGTACCAAATCAAAGAGCGG
CGATGATTCCAATAACAACAGCAATGATCGCAACGACGATGCCAGCATGGGGCTCAATGC
AAGGGATGGCAGCGATAATGGCAGTGGCACTCAGAGCTCATGGACAAAGCGTGCCGTTGA
GATCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGATCCCCCTGAAGGCACTTG
TGCCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGATGGTTACCAGGTGATGG
ATTCAAAGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGATCAATC
CTCCCCGAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGCAGCAGCTAGAGCCATAG
ATGCTCCTAACTGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCTA
TGCCATATCTTGAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGA
TCCAGGAGGAACAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTGCA
AAGCATAATATCAGTGTCCTTTGTGAATCCTGAAATCATCCGTATGTTGCATACTAACCG
TTTTCATTCTTTGCAAGGTACAATATGTGTGCGGTCTCCAATCAAGGCGGGGCAGGGTTC
GTCGGGAGCTGCTCACCCAACGGCGACAGCTCCGAGGCCGCGAAAACGGTTGCTGCTCAG
ATGAAGCAGGGCTCTAACGGCAGCAGCAACAACAATGACATGGGCTCCACCACGAAGAGC
GTGGTGACCAAGCCCTGTGGAAATAATAAGGTTTCGCCCATCAACGGCAACACACACACG
TCGGCGTTTCATCGTGTGCAGCCATGGACGCCAGCGACAGCAGCAGGAAAAGACAAGGCT
GATGAAGTGAGCAAGAAGAACGTTGCAGCAGCAGCAGCAGCAGCGAAAGAAATGGGTTGT
GAAGCACAGAGCAAACACCCCTGTGCAGCGGCCGATGACGTGAATGGTGGATCGGCAGGA
GGCACTGCTCAGTCCAGTGTTGTCAATCCTTCGGGTCCGGTTGAAGGCCATACTGCCAAC
TATGGTAGCAACTCATTCAGCAATAACAACACCAATAACGGGAGCACCGCAGCTACCACT
GCTGCTGCTGCTGCTGTACATGCTGAGACCGGTGGTGGCGTCGACAAAAGAAGTAACATG
ATGAACATGAAACGGGAGCGCCGTGTGGCCGCCGTGAACAAGTTCAGAGAGAAGAGAAAA
GAGAGGAACTTCGGGAAGAAGGTGCGTTACCAGAGCAGGAAGCGGCTGGCCGAGCAGCGC
CCACGGGTGCGCTGGCAGTTCGTGCGGCAGCCGCCGGCGCCGGCGACCGTGGAGAGATAA
CCTCCCGCCACGCACCTAGCTATACCTAGTACTCTACTAATTAGACAGCTGATTCTTGTG
TCTTTGGCCATGGATCATTGGGAGCTCGTCTCATCTCCTGGAAGAAGAAGAATAACGAGT
GACTCCTCCTGCCTGCCTTAGCGACCTACCATAGAACATGCCGGCGGAGGAGGACGAGGG
CGATTGTACATAGTAGGAGCGTGTGGAGCCGATCAGACAGGCTCCCGCTCTTGAATGTAG
CAGCAATTGACCAATCAATGTCTGAGCCTCTAGAATGGTAGTATGAGTGAGTATTGTGCT
GTACACTTGTCATCAGCTTGGCCATGGCGGCA