Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G013400.22

ChromosomeExonStartStopDirection
chr2H12912385729123762+
chr2H22912450529124063+
chr2H32912478129124617+
chr2H42912499229124859+
chr2H52912534429125189+
chr2H62912596929125780+
chr2H72912723029126067+
chr2H82912776029127330+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os07g49460.2 +2 6e-172 519 289/404 (72%) protein|response regulator receiver domain containing protein, expressed
TAIR PP10 AT5G02810 @ ARAPORT
AT5G02810.1 @ TAIR		 +2 4e-66 236 179/421 (43%) Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727
BRACH PP3 Bradi1g16490.7.p +2 0.0 525 298/407 (73%) pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2779 bp)

>HORVU2Hr1G013400.22 2779 150831_barley_pseudomolecules
CACACACAGCACACCCTCCTCGGCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATGGC
CTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCAAGCCGCCGGCAGCTCCATTCCAGGAG
ACGATTCATTCCGCTGCAGTCTCAACCCCCTTGCTCTTGTGTGTTTTTTTTGCGTTTTGT
TTTTATTGGTTTGGTCCGCTGCTCCGCCGCCGTCGACGACGAACGCCGTGGGACTCCCGG
ATGCGACCGAGGTTCGACTGTCATTCACGGCCCTATTGCTTGCTGTTGCTGCTGGCTCCT
GCCTCCGCGTCAACCACCACCAAACGACCCCAACATGTTTCCTCTTGGAGCCAGGCAGCC
TCCTCCTAGCGCCATGGACAATCAGCAGCAGCAGCAGCCGCCGCGCGGGGAGCACGCCGC
CCAGCCGCGATGCTGGGAGGAGTTCCTACACAGGAAGACCATCCGGGTCCTGCTCGTGGA
GACCGACGACTCCACCAGGCAGGTCGTCGCCGCCCTGCTCCGCCACTGCATGTACCAAGT
TATCCCCGTCGAGAACGGCCACCAGGCGTGGGCGTATCTTCAGGACATGCAGAGCAACAT
CGACCTTGTTCTCACAGAGGTGTTCATGCACGGCGGCCTCTCCGGGATCGACCTGCTCGG
CAGGATCATGAACCACGAGGTCTGCAAGGACATCCCCGTCATCATGATGTCGTCGCACGA
TTCCATGGGCACCGTCCTCAGCTGCCTCTCAAATGGTGCTGCTGACTTCTTGGCCAAGCC
GATACGTAAGAACGAGCTTAAGAACCTTTGGGCGCATGTGTGGCGACGGTCTCACAGCTC
CAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGTACCAAATCAAAGAGCGG
CGATGATTCCAATAACAACAGCAATGATCGCAACGACGATGCCAGCATGGGGCTCAATGC
AAGGGATGGCAGCGATAATGGCAGTGGCACTCAGGCGCAGAGCTCATGGACAAAGCGTGC
CGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGATCCCCCTGAAGG
CACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGATGGTTACCAGG
TACAAATAACAAAAAATGCCAGAAACCAAAAGAAACCACTAATGGTGATGGATTCAAAGG
CAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGATCAATCCTCCCCGAA
CGAGAGTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTGCCACAGAACAATTCCAG
TGATACGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCTGACTTAATCGGTTC
GATGGCCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCATAGATGCTCCTAACTG
CTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCTATGCCATATCTTGA
GCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGATCCAGGAGGAACA
GAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTGCAAAGCATAATATCA
GTGTCCTTTGTGAATCCTGAAATCATCCGTATGTTGCATACTAACCGTTTTCATTCTTTG
CAAGGTACAATATGTGTGCGGTCTCCAATCAAGGCGGGGCAGGGTTCGTCGGGAGCTGCT
CACCCAACGGCGACAGCTCCGAGGCCGCGAAAACGGTTGCTGCTCAGATGAAGCAGGGCT
CTAACGGCAGCAGCAACAACAATGACATGGGCTCCACCACGAAGAGCGTGGTGACCAAGC
CCTGTGGAAATAATAAGGTTTCGCCCATCAACGGCAACACACACACGTCGGCGTTTCATC
GTGTGCAGCCATGGACGCCAGCGACAGCAGCAGGAAAAGACAAGGCTGATGAAGTGAGCA
AGAAGAACGTTGCAGCAGCAGCAGCAGCAGCGAAAGAAATGGGTTGTGAAGCACAGAGCA
AACACCCCTGTGCAGCGGCCGATGACGTGAATGGTGGATCGGCAGGAGGCACTGCTCAGT
CCAGTGTTGTCAATCCTTCGGGTCCGGTTGAAGGCCATACTGCCAACTATGGTAGCAACT
CATTCAGCAATAACAACACCAATAACGGGAGCACCGCAGCTACCACTGCTGCTGCTGCTG
CTGTACATGCTGAGACCGGTGGTGGCGTCGACAAAAGAAGTAACATGATGAACATGAAAC
GGGAGCGCCGTGTGGCCGCCGTGAACAAGTTCAGAGAGAAGAGAAAAGAGAGGAACTTCG
GGAAGAAGGTGCGTTACCAGAGCAGGAAGCGGCTGGCCGAGCAGCGCCCACGGGTGCGCT
GGCAGTTCGTGCGGCAGCCGCCGGCGCCGGCGACCGTGGAGAGATAACCTCCCGCCACGC
ACCTAGCTATACCTAGTACTCTACTAATTAGACAGCTGATTCTTGTGTCTTTGGCCATGG
ATCATTGGGAGCTCGTCTCATCTCCTGGAAGAAGAAGAATAACGAGTGACTCCTCCTGCC
TGCCTTAGCGACCTACCATAGAACATGCCGGCGGAGGAGGACGAGGGCGATTGTACATAG
TAGGAGCGTGTGGAGCCGATCAGACAGGCTCCCGCTCTTGAATGTAGCAGCAATTGACCA
ATCAATGTCTGAGCCTCTAGAATGGTAGTATGAGTGAGTATTGTGCTGTACACTTGTCAT
CAGCTTGGCCATGGCGGCA