- Transcript HORVU2Hr1G013400.18
- Transcript IDHORVU2Hr1G013400.18
- Gene IDHORVU2Hr1G013400
Barley RTD
Exon Structure of HORVU2Hr1G013400.18
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29123857 | 29123760 | + |
| chr2H | 2 | 29124217 | 29123960 | + |
| chr2H | 3 | 29124505 | 29124325 | + |
| chr2H | 4 | 29124781 | 29124617 | + |
| chr2H | 5 | 29124992 | 29124859 | + |
| chr2H | 6 | 29125344 | 29125189 | + |
| chr2H | 7 | 29125924 | 29125786 | + |
| chr2H | 8 | 29127230 | 29126067 | + |
| chr2H | 9 | 29127894 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +3 | 3e-163 | 497 | 280/402 (70%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+3 | 2e-66 | 237 | 174/417 (42%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g16490.7.p | +3 | 0.0 | 510 | 290/397 (73%) | pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2860 bp)
>HORVU2Hr1G013400.18 2860 150831_barley_pseudomolecules CACACACACAGCACACCCTCCTCGGCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATG GCCTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCAAGGGCACGCTCAGGCTCTCTCTAG CTGCTGCTAATAGTATGTGTCCGGAAATTGCTGGAGATTAACCGGCTCGCACGCCTTGTC TGCTACTGCCCCCCCTTATAGCCGCCGGCAGCTCCATTCCAGGAGACGATTCATTCCGCT GCAGTCTCAACCCCCTTGCTCTTGTGTGTTTTTTTTGCGTTTTGTTTTTATTGGTTTGGT CCGCTGCTCCGCCGCCGTCGACGACGAACGCCGTGGGACTCCCGGATGCGACCGAGCCTC CTCCTAGCGCCATGGACAATCAGCAGCAGCAGCAGCCGCCGCGCGGGGAGCACGCCGCCC AGCCGCGATGCTGGGAGGAGTTCCTACACAGGAAGACCATCCGGGTCCTGCTCGTGGAGA CCGACGACTCCACCAGGCAGGTCGTCGCCGCCCTGCTCCGCCACTGCATGTACCAAGTTA TCCCCGTCGAGAACGGCCACCAGGCGTGGGCGTATCTTCAGGACATGCAGAGCAACATCG ACCTTGTTCTCACAGAGGTGTTCATGCACGGCGGCCTCTCCGGGATCGACCTGCTCGGCA GGATCATGAACCACGAGGTCTGCAAGGACATCCCCGTCATCATGATGTCGTCGCACGATT CCATGGGCACCGTCCTCAGCTGCCTCTCAAATGGTGCTGCTGACTTCTTGGCCAAGCCGA TACGTAAGAACGAGCTTAAGAACCTTTGGGCGCATGTGTGGCGACGGTCTCACAGCTCCA GTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGTACCAAATCAAAGAGCGGCG ATGATTCCAATAACAACAGCAATGATCGCAACGACGATGCCAGCATGGGGCTCAATGCAA GGGATGGCAGCGATAATGGCAGTGGCACTCAGAGCTCATGGACAAAGCGTGCCGTTGAGA TCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGATCCCCCTGAAGGCACTTGTG CCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGATGGTTACCAGGTGATGGAT TCAAAGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGATCAATCCT CCCCGAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTGCCACAGAACA ATTCCAGTGATACGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCTGACTTAA TCGGTTCGATGGCCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCATAGATGCTC CTAACTGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCTATGCCAT ATCTTGAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCGATCCAGG AGGAACAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTGCAAAGCAT AATATCAGTGTCCTTTGTGAATCCTGAAATCATCCGTATGTTGCATACTAACCGTTTTCA TTCTTTGCAAGGTACAATATGTGTGCGGTCTCCAATCAAGGCGGGGCAGGGTTCGTCGGG AGCTGCTCACCCAACGGCGACAGCTCCGAGGCCGCGAAAACGGTTGCTGCTCAGATGAAG CAGGGCTCTAACGGCAGCAGCAACAACAATGACATGGGCTCCACCACGAAGAGCGTGGTG ACCAAGCCCTGTGGAAATAATAAGGTTTCGCCCATCAACGGCAACACACACACGTCGGCG TTTCATCGTGTGCAGCCATGGACGCCAGCGACAGCAGCAGGAAAAGACAAGGCTGATGAA GTGAGCAAGAAGAACGTTGCAGCAGCAGCAGCAGCAGCGAAAGAAATGGGTTGTGAAGCA CAGAGCAAACACCCCTGTGCAGCGGCCGATGACGTGAATGGTGGATCGGCAGGAGGCACT GCTCAGTCCAGTGTTGTCAATCCTTCGGGTCCGGTTGAAGGCCATACTGCCAACTATGGT AGCAACTCATTCAGCAATAACAACACCAATAACGGGAGCACCGCAGCTACCACTGCTGCT GCTGCTGCTGTACATGCTGAGACCGGTGGTGGCGTCGACAAAAGAAGTAACATGATGAAC ATGAAACGGGAGCGCCGTGTGGCCGCCGTGAACAAGTTCAGAGAGAAGAGAAAAGAGAGG AACTTCGGGAAGAAGGTGCGTTACCAGAGCAGGAAGCGGCTGGCCGAGCAGCGCCCACGG GTGCGCTGGCAGTTCGTGCGGCAGCCGCCGGCGCCGGCGACCGTGGAGAGATAACCTCCC GCCACGCACCTAGCTATACCTAGTACTCTACTAATTAGACAGCTGATTCTTGTGTCTTTG GCCATGGATCATTGGGAGCTCGTCTCATCTCCTGGAAGAAGAAGAATAACGAGTGACTCC TCCTGCCTGCCTTAGCGACCTACCATAGAACATGCCGGCGGAGGAGGACGAGGGCGATTG TACATAGTAGGAGCGTGTGGAGCCGATCAGACAGGCTCCCGCTCTTGAATGTAGCAGCAA TTGACCAATCAATGTCTGAGCCTCTAGAATGGTAGTATGAGTGAGTATTGTGCTGTACAC TTGTCATCAGCTTGGCCATGGCGGCAGCCTTGTCAGGTGTCATCAATCAACGCATATTTG TGGTTTCTTTCTAGTTACCGGGCAGACATCATCATCGTACTTGTTGCAAATCTGTCTAAC CTGTGTCGGCATCACGCGACATGTGGAAGTTTTGTTGCAC