- Transcript HORVU2Hr1G013400.16
- Transcript IDHORVU2Hr1G013400.16
- Gene IDHORVU2Hr1G013400
Barley RTD
Exon Structure of HORVU2Hr1G013400.16
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29124505 | 29123760 | + |
| chr2H | 2 | 29124781 | 29124617 | + |
| chr2H | 3 | 29124992 | 29124859 | + |
| chr2H | 4 | 29125344 | 29125189 | + |
| chr2H | 5 | 29125974 | 29125786 | + |
| chr2H | 6 | 29126174 | 29126067 | + |
| chr2H | 7 | 29127230 | 29126291 | + |
| chr2H | 8 | 29127859 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +2 | 2e-126 | 402 | 246/405 (61%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+2 | 9e-63 | 227 | 171/416 (41%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g16490.7.p | +2 | 0.0 | 431 | 256/404 (63%) | pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2968 bp)
>HORVU2Hr1G013400.16 2968 150831_barley_pseudomolecules CACACACACAGCACACCCTCCTCGGCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATG GCCTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCAAGGTGCGCTCCCGCCCGTCTATGG TCACCCACGCGCTCTGTTTCCGCTCGATTGGGGGATCGAATCACCCGTTTCAATCTCAAT CTACGTGCGTGTGGATCCAGGGCACGCTCAGGCTCTCTCTAGCTGCTGCTAATAGTATGT GTCCGGAAATTGCTGGAGATTAACCGGCTCGCACGCCTTGTCTGCTACTGCCCCCCCTTA TAGCCGCCGGCAGCTCCATTCCAGGAGACGATTCATTCCGCTGCAGTCTCAACCCCCTTG CTCTTGTGTGTTTTTTTTGCGTTTTGTTTTTATTGGTTTGGTCCGCTGCTCCGCCGCCGT CGACGACGAACGCCGTGGGACTCCCGGATGCGACCGAGGTTCGACTGTCATTCACGGCCC TATTGCTTGCTGTTGCTGCTGGCTCCTGCCTCCGCGTCAACCACCACCAAACGACCCCAA CATGTTTCCTCTTGGAGCCAGGCAGCCTCCTCCTAGCGCCATGGACAATCAGCAGCAGCA GCAGCCGCCGCGCGGGGAGCACGCCGCCCAGCCGCGATGCTGGGAGGAGTTCCTACACAG GAAGACCATCCGGGTCCTGCTCGTGGAGACCGACGACTCCACCAGGCAGGTCGTCGCCGC CCTGCTCCGCCACTGCATGTACCAAGTTATCCCCGTCGAGAACGGCCACCAGGCGTGGGC GTATCTTCAGGACATGCAGAGCAACATCGACCTTGTTCTCACAGAGGTGTTCATGCACGG CGGCCTCTCCGGGATCGACCTGCTCGGCAGGATCATGAACCACGAGGTCTGCAAGGACAT CCCCGTCATCATGATGTCGTCGCACGATTCCATGGGCACCGTCCTCAGCTGCCTCTCAAA TGGTGCTGCTGACTTCTTGGCCAAGCCGATACGTAAGAACGAGCTTAAGAACCTTTGGGC GCATGTGTGGCGACGGTCTCACAGCTCCAGTGGCAGTGGTAGTGGAAGTGCCATTCAGAC TCAGAAGTGTACCAAATCAAAGAGCGGCGATGATTCCAATAACAACAGCAATGATCGCAA CGACGATGCCAGCATGGGGCTCAATGCAAGGGATGGCAGCGATAATGGCAGTGGCACTCA GAGCTCATGGACAAAGCGTGCCGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCA GTCAGCCGATCCCCCTGAAGGCACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATG CAGCAATAGATGGTTACCAGGTACAAATAACAAAAAATGCCAGAAACCAAAAGAAACCAC TAATGGTATGGTGATGGATTCAAAGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTG AACACAGACGATCAATCCTCCCCGAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGC AGCAGCTAGAGCCATAGATGCTCCTAACTGCTCCTTACAGGCGTCGGAAGGGAAAGACAC GGACGGCGAGAACGCTATGCCATATCTTGAGCTGAGCCTGAAGAGGTCGAGATCGACCGG GGAAGGTGCAGGCCCGATCCAGGAGGAACAGAGGAACGTCGTGAGACGGTCAGACCTGTC GGCATTCACGAGGTGCAAAGCATAATATCAGTGTCCTTTGTGAATCCTGAAATCATCCGT ATGTTGCATACTAACCGTTTTCATTCTTTGCAAGGTACAATATGTGTGCGGTCTCCAATC AAGGCGGGGCAGGGTTCGTCGGGAGCTGCTCACCCAACGGCGACAGCTCCGAGGCCGCGA AAACGGTTGCTGCTCAGATGAAGCAGGGCTCTAACGGCAGCAGCAACAACAATGACATGG GCTCCACCACGAAGAGCGTGGTGACCAAGCCCTGTGGAAATAATAAGGTTTCGCCCATCA ACGGCAACACACACACGTCGGCGTTTCATCGTGTGCAGCCATGGACGCCAGCGACAGCAG CAGGAAAAGACAAGGCTGATGAAGTGAGCAAGAAGAACGTTGCAGCAGCAGCAGCAGCAG CGAAAGAAATGGGTTGTGAAGCACAGAGCAAACACCCCTGTGCAGCGGCCGATGACGTGA ATGGTGGATCGGCAGGAGGCACTGCTCAGTCCAGTGTTGTCAATCCTTCGGGTCCGGTTG AAGGCCATACTGCCAACTATGGTAGCAACTCATTCAGCAATAACAACACCAATAACGGGA GCACCGCAGCTACCACTGCTGCTGCTGCTGCTGTACATGCTGAGACCGGTGGTGGCGTCG ACAAAAGAAGTAACATGATGAACATGAAACGGGAGCGCCGTGTGGCCGCCGTGAACAAGT TCAGAGAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAGGTGCGTTACCAGAGCAGGAAGC GGCTGGCCGAGCAGCGCCCACGGGTGCGCTGGCAGTTCGTGCGGCAGCCGCCGGCGCCGG CGACCGTGGAGAGATAACCTCCCGCCACGCACCTAGCTATACCTAGTACTCTACTAATTA GACAGCTGATTCTTGTGTCTTTGGCCATGGATCATTGGGAGCTCGTCTCATCTCCTGGAA GAAGAAGAATAACGAGTGACTCCTCCTGCCTGCCTTAGCGACCTACCATAGAACATGCCG GCGGAGGAGGACGAGGGCGATTGTACATAGTAGGAGCGTGTGGAGCCGATCAGACAGGCT CCCGCTCTTGAATGTAGCAGCAATTGACCAATCAATGTCTGAGCCTCTAGAATGGTAGTA TGAGTGAGTATTGTGCTGTACACTTGTCATCAGCTTGGCCATGGCGGCAGCCTTGTCAGG TGTCATCAATCAACGCATATTTGTGGTTTCTTTCTAGTTACCGGGCAGACATCATCATCG TACTTGTTGCAAATCTGTCTAACCTGTG