- Transcript HORVU2Hr1G013400.15
- Transcript IDHORVU2Hr1G013400.15
- Gene IDHORVU2Hr1G013400
Barley RTD
Exon Structure of HORVU2Hr1G013400.15
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29124505 | 29123760 | + |
| chr2H | 2 | 29124781 | 29124617 | + |
| chr2H | 3 | 29124992 | 29124859 | + |
| chr2H | 4 | 29125344 | 29125189 | + |
| chr2H | 5 | 29125924 | 29125780 | + |
| chr2H | 6 | 29127230 | 29126067 | + |
| chr2H | 7 | 29127783 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +2 | 6e-165 | 502 | 287/402 (71%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+2 | 3e-64 | 231 | 178/420 (42%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g16490.7.p | +2 | 0.0 | 505 | 290/401 (72%) | pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2964 bp)
>HORVU2Hr1G013400.15 2964 150831_barley_pseudomolecules CACACACACAGCACACCCTCCTCGGCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATG GCCTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCAAGGTGCGCTCCCGCCCGTCTATGG TCACCCACGCGCTCTGTTTCCGCTCGATTGGGGGATCGAATCACCCGTTTCAATCTCAAT CTACGTGCGTGTGGATCCAGGGCACGCTCAGGCTCTCTCTAGCTGCTGCTAATAGTATGT GTCCGGAAATTGCTGGAGATTAACCGGCTCGCACGCCTTGTCTGCTACTGCCCCCCCTTA TAGCCGCCGGCAGCTCCATTCCAGGAGACGATTCATTCCGCTGCAGTCTCAACCCCCTTG CTCTTGTGTGTTTTTTTTGCGTTTTGTTTTTATTGGTTTGGTCCGCTGCTCCGCCGCCGT CGACGACGAACGCCGTGGGACTCCCGGATGCGACCGAGGTTCGACTGTCATTCACGGCCC TATTGCTTGCTGTTGCTGCTGGCTCCTGCCTCCGCGTCAACCACCACCAAACGACCCCAA CATGTTTCCTCTTGGAGCCAGGCAGCCTCCTCCTAGCGCCATGGACAATCAGCAGCAGCA GCAGCCGCCGCGCGGGGAGCACGCCGCCCAGCCGCGATGCTGGGAGGAGTTCCTACACAG GAAGACCATCCGGGTCCTGCTCGTGGAGACCGACGACTCCACCAGGCAGGTCGTCGCCGC CCTGCTCCGCCACTGCATGTACCAAGTTATCCCCGTCGAGAACGGCCACCAGGCGTGGGC GTATCTTCAGGACATGCAGAGCAACATCGACCTTGTTCTCACAGAGGTGTTCATGCACGG CGGCCTCTCCGGGATCGACCTGCTCGGCAGGATCATGAACCACGAGGTCTGCAAGGACAT CCCCGTCATCATGATGTCGTCGCACGATTCCATGGGCACCGTCCTCAGCTGCCTCTCAAA TGGTGCTGCTGACTTCTTGGCCAAGCCGATACGTAAGAACGAGCTTAAGAACCTTTGGGC GCATGTGTGGCGACGGTCTCACAGCTCCAGTGGCAGTGGTAGTGGAAGTGCCATTCAGAC TCAGAAGTGTACCAAATCAAAGAGCGGCGATGATTCCAATAACAACAGCAATGATCGCAA CGACGATGCCAGCATGGGGCTCAATGCAAGGGATGGCAGCGATAATGGCAGTGGCACTCA GGCGCAGAGCTCATGGACAAAGCGTGCCGTTGAGATCGACAGTCCCCAGGACATGTCTCC GGATCAGTCAGCCGATCCCCCTGAAGGCACTTGTGCCCATGTGAACCATCCCAAGTCAGA GATATGCAGCAATAGATGGTTACCAGGTGATGGATTCAAAGGCAAGGAGTTGGAGATAGG AGCCCCTGGTAATTTGAACACAGACGATCAATCCTCCCCGAACGAGAGTTCGGTCAAACC AACCGATGGACGGTGTGAGTATCTGCCACAGAACAATTCCAGTGATACGGTCATGGAGAA TTTGGAGGAGCCAATTGTTCGAGCTGCTGACTTAATCGGTTCGATGGCCAAAAACATGGA CGCCCAACAGGCAGCAGCTAGAGCCATAGATGCTCCTAACTGCTCCTTACAGGCGTCGGA AGGGAAAGACACGGACGGCGAGAACGCTATGCCATATCTTGAGCTGAGCCTGAAGAGGTC GAGATCGACCGGGGAAGGTGCAGGCCCGATCCAGGAGGAACAGAGGAACGTCGTGAGACG GTCAGACCTGTCGGCATTCACGAGGTGCAAAGCATAATATCAGTGTCCTTTGTGAATCCT GAAATCATCCGTATGTTGCATACTAACCGTTTTCATTCTTTGCAAGGTACAATATGTGTG CGGTCTCCAATCAAGGCGGGGCAGGGTTCGTCGGGAGCTGCTCACCCAACGGCGACAGCT CCGAGGCCGCGAAAACGGTTGCTGCTCAGATGAAGCAGGGCTCTAACGGCAGCAGCAACA ACAATGACATGGGCTCCACCACGAAGAGCGTGGTGACCAAGCCCTGTGGAAATAATAAGG TTTCGCCCATCAACGGCAACACACACACGTCGGCGTTTCATCGTGTGCAGCCATGGACGC CAGCGACAGCAGCAGGAAAAGACAAGGCTGATGAAGTGAGCAAGAAGAACGTTGCAGCAG CAGCAGCAGCAGCGAAAGAAATGGGTTGTGAAGCACAGAGCAAACACCCCTGTGCAGCGG CCGATGACGTGAATGGTGGATCGGCAGGAGGCACTGCTCAGTCCAGTGTTGTCAATCCTT CGGGTCCGGTTGAAGGCCATACTGCCAACTATGGTAGCAACTCATTCAGCAATAACAACA CCAATAACGGGAGCACCGCAGCTACCACTGCTGCTGCTGCTGCTGTACATGCTGAGACCG GTGGTGGCGTCGACAAAAGAAGTAACATGATGAACATGAAACGGGAGCGCCGTGTGGCCG CCGTGAACAAGTTCAGAGAGAAGAGAAAAGAGAGGAACTTCGGGAAGAAGGTGCGTTACC AGAGCAGGAAGCGGCTGGCCGAGCAGCGCCCACGGGTGCGCTGGCAGTTCGTGCGGCAGC CGCCGGCGCCGGCGACCGTGGAGAGATAACCTCCCGCCACGCACCTAGCTATACCTAGTA CTCTACTAATTAGACAGCTGATTCTTGTGTCTTTGGCCATGGATCATTGGGAGCTCGTCT CATCTCCTGGAAGAAGAAGAATAACGAGTGACTCCTCCTGCCTGCCTTAGCGACCTACCA TAGAACATGCCGGCGGAGGAGGACGAGGGCGATTGTACATAGTAGGAGCGTGTGGAGCCG ATCAGACAGGCTCCCGCTCTTGAATGTAGCAGCAATTGACCAATCAATGTCTGAGCCTCT AGAATGGTAGTATGAGTGAGTATTGTGCTGTACACTTGTCATCAGCTTGGCCATGGCGGC AGCCTTGTCAGGTGTCATCAATCA