Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G013400.14

ChromosomeExonStartStopDirection
chr2H12912385729123760+
chr2H22912421729123960+
chr2H32912450529124321+
chr2H42912478129124617+
chr2H52912499229124859+
chr2H62912534429125189+
chr2H72912592429125780+
chr2H82912723029126067+
chr2H92912778229127330+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os07g49460.2 +1 3e-166 503 287/402 (71%) protein|response regulator receiver domain containing protein, expressed
TAIR PP10 AT5G02810 @ ARAPORT
AT5G02810.1 @ TAIR		 +1 7e-65 232 178/420 (42%) Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727
BRACH PP3 Bradi1g16490.7.p +1 0.0 507 290/401 (72%) pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2758 bp)

>HORVU2Hr1G013400.14 2758 150831_barley_pseudomolecules
CACACACACAGCACACCCTCCTCGGCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATG
GCCTCGTCGTCCTCCTCCTGACCGGCAGCAGACCCAAGGGCACGCTCAGGCTCTCTCTAG
CTGCTGCTAATAGTATGTGTCCGGAAATTGCTGGAGATTAACCGGCTCGCACGCCTTGTC
TGCTACTGCCCCCCCTTATAGCCGCCGGCAGCTCCATTCCAGGAGACGATTCATTCCGCT
GCAGTCTCAACCCCCTTGCTCTTGTGTGTTTTTTTTGCGTTTTGTTTTTATTGGTTTGGT
CCGCTGCTCCGCCGCCGTCGACGACGAACGCCGTGGGACTCCCGGATGCGACCGAGGCAG
CCTCCTCCTAGCGCCATGGACAATCAGCAGCAGCAGCAGCCGCCGCGCGGGGAGCACGCC
GCCCAGCCGCGATGCTGGGAGGAGTTCCTACACAGGAAGACCATCCGGGTCCTGCTCGTG
GAGACCGACGACTCCACCAGGCAGGTCGTCGCCGCCCTGCTCCGCCACTGCATGTACCAA
GTTATCCCCGTCGAGAACGGCCACCAGGCGTGGGCGTATCTTCAGGACATGCAGAGCAAC
ATCGACCTTGTTCTCACAGAGGTGTTCATGCACGGCGGCCTCTCCGGGATCGACCTGCTC
GGCAGGATCATGAACCACGAGGTCTGCAAGGACATCCCCGTCATCATGATGTCGTCGCAC
GATTCCATGGGCACCGTCCTCAGCTGCCTCTCAAATGGTGCTGCTGACTTCTTGGCCAAG
CCGATACGTAAGAACGAGCTTAAGAACCTTTGGGCGCATGTGTGGCGACGGTCTCACAGC
TCCAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAGTGTACCAAATCAAAGAGC
GGCGATGATTCCAATAACAACAGCAATGATCGCAACGACGATGCCAGCATGGGGCTCAAT
GCAAGGGATGGCAGCGATAATGGCAGTGGCACTCAGGCGCAGAGCTCATGGACAAAGCGT
GCCGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCCGATCCCCCTGAA
GGCACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAATAGATGGTTACCA
GGTGATGGATTCAAAGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGAC
GATCAATCCTCCCCGAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTG
CCACAGAACAATTCCAGTGATACGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCT
GCTGACTTAATCGGTTCGATGGCCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCC
ATAGATGCTCCTAACTGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAAC
GCTATGCCATATCTTGAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGC
CCGATCCAGGAGGAACAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGG
TGCAAAGCATAATATCAGTGTCCTTTGTGAATCCTGAAATCATCCGTATGTTGCATACTA
ACCGTTTTCATTCTTTGCAAGGTACAATATGTGTGCGGTCTCCAATCAAGGCGGGGCAGG
GTTCGTCGGGAGCTGCTCACCCAACGGCGACAGCTCCGAGGCCGCGAAAACGGTTGCTGC
TCAGATGAAGCAGGGCTCTAACGGCAGCAGCAACAACAATGACATGGGCTCCACCACGAA
GAGCGTGGTGACCAAGCCCTGTGGAAATAATAAGGTTTCGCCCATCAACGGCAACACACA
CACGTCGGCGTTTCATCGTGTGCAGCCATGGACGCCAGCGACAGCAGCAGGAAAAGACAA
GGCTGATGAAGTGAGCAAGAAGAACGTTGCAGCAGCAGCAGCAGCAGCGAAAGAAATGGG
TTGTGAAGCACAGAGCAAACACCCCTGTGCAGCGGCCGATGACGTGAATGGTGGATCGGC
AGGAGGCACTGCTCAGTCCAGTGTTGTCAATCCTTCGGGTCCGGTTGAAGGCCATACTGC
CAACTATGGTAGCAACTCATTCAGCAATAACAACACCAATAACGGGAGCACCGCAGCTAC
CACTGCTGCTGCTGCTGCTGTACATGCTGAGACCGGTGGTGGCGTCGACAAAAGAAGTAA
CATGATGAACATGAAACGGGAGCGCCGTGTGGCCGCCGTGAACAAGTTCAGAGAGAAGAG
AAAAGAGAGGAACTTCGGGAAGAAGGTGCGTTACCAGAGCAGGAAGCGGCTGGCCGAGCA
GCGCCCACGGGTGCGCTGGCAGTTCGTGCGGCAGCCGCCGGCGCCGGCGACCGTGGAGAG
ATAACCTCCCGCCACGCACCTAGCTATACCTAGTACTCTACTAATTAGACAGCTGATTCT
TGTGTCTTTGGCCATGGATCATTGGGAGCTCGTCTCATCTCCTGGAAGAAGAAGAATAAC
GAGTGACTCCTCCTGCCTGCCTTAGCGACCTACCATAGAACATGCCGGCGGAGGAGGACG
AGGGCGATTGTACATAGTAGGAGCGTGTGGAGCCGATCAGACAGGCTCCCGCTCTTGAAT
GTAGCAGCAATTGACCAATCAATGTCTGAGCCTCTAGAATGGTAGTATGAGTGAGTATTG
TGCTGTACACTTGTCATCAGCTTGGCCATGGCGGCAGCCTTGTCAGGTGTCATCAATC