- Transcript HORVU2Hr1G013400.1
- Transcript IDHORVU2Hr1G013400.1
- Gene IDHORVU2Hr1G013400
Barley RTD
Exon Structure of HORVU2Hr1G013400.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 29124217 | 29123724 | + |
| chr2H | 2 | 29124505 | 29124321 | + |
| chr2H | 3 | 29124781 | 29124617 | + |
| chr2H | 4 | 29124992 | 29124859 | + |
| chr2H | 5 | 29125344 | 29125189 | + |
| chr2H | 6 | 29125969 | 29125786 | + |
| chr2H | 7 | 29127230 | 29126067 | + |
| chr2H | 8 | 29127856 | 29127330 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g49460.2 | +1 | 2e-167 | 509 | 292/404 (72%) | protein|response regulator receiver domain containing protein, expressed |
| TAIR PP10 | AT5G02810 @ ARAPORT AT5G02810.1 @ TAIR |
+1 | 3e-66 | 237 | 178/419 (42%) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727 |
| BRACH PP3 | Bradi1g16490.7.p | +1 | 0.0 | 531 | 298/405 (74%) | pacid=32803660 transcript=Bradi1g16490.7 locus=Bradi1g16490 ID=Bradi1g16490.7.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3009 bp)
>HORVU2Hr1G013400.1 3009 150831_barley_pseudomolecules CTCCTCCGCCCCCCTCCCTCGCCTCCCACACCCACCCACACACACAGCACACCCTCCTCG GCTCGACTCGACTCGCCGCCGCCGCCGCAGTCCATGGCCTCGTCGTCCTCCTCCTGACCG GCAGCAGACCCAAGGTGCGCTCCCGCCCGTCTATGGTCACCCACGCGCTCTGTTTCCGCT CGATTGGGGGATCGAATCACCCGTTTCAATCTCAATCTACGTGCGTGTGGATCCAGGGCA CGCTCAGGCTCTCTCTAGCTGCTGCTAATAGTATGTGTCCGGAAATTGCTGGAGATTAAC CGGCTCGCACGCCTTGTCTGCTACTGCCCCCCCTTATAGCCGCCGGCAGCTCCATTCCAG GAGACGATTCATTCCGCTGCAGTCTCAACCCCCTTGCTCTTGTGTGTTTTTTTTGCGTTT TGTTTTTATTGGTTTGGTCCGCTGCTCCGCCGCCGTCGACGACGAACGCCGTGGGACTCC CGGATGCGACCGAGGCAGCCTCCTCCTAGCGCCATGGACAATCAGCAGCAGCAGCAGCCG CCGCGCGGGGAGCACGCCGCCCAGCCGCGATGCTGGGAGGAGTTCCTACACAGGAAGACC ATCCGGGTCCTGCTCGTGGAGACCGACGACTCCACCAGGCAGGTCGTCGCCGCCCTGCTC CGCCACTGCATGTACCAAGTTATCCCCGTCGAGAACGGCCACCAGGCGTGGGCGTATCTT CAGGACATGCAGAGCAACATCGACCTTGTTCTCACAGAGGTGTTCATGCACGGCGGCCTC TCCGGGATCGACCTGCTCGGCAGGATCATGAACCACGAGGTCTGCAAGGACATCCCCGTC ATCATGATGTCGTCGCACGATTCCATGGGCACCGTCCTCAGCTGCCTCTCAAATGGTGCT GCTGACTTCTTGGCCAAGCCGATACGTAAGAACGAGCTTAAGAACCTTTGGGCGCATGTG TGGCGACGGTCTCACAGCTCCAGTGGCAGTGGTAGTGGAAGTGCCATTCAGACTCAGAAG TGTACCAAATCAAAGAGCGGCGATGATTCCAATAACAACAGCAATGATCGCAACGACGAT GCCAGCATGGGGCTCAATGCAAGGGATGGCAGCGATAATGGCAGTGGCACTCAGAGCTCA TGGACAAAGCGTGCCGTTGAGATCGACAGTCCCCAGGACATGTCTCCGGATCAGTCAGCC GATCCCCCTGAAGGCACTTGTGCCCATGTGAACCATCCCAAGTCAGAGATATGCAGCAAT AGATGGTTACCAGGTACAAATAACAAAAAATGCCAGAAACCAAAAGAAACCACTAATGGT GATGGATTCAAAGGCAAGGAGTTGGAGATAGGAGCCCCTGGTAATTTGAACACAGACGAT CAATCCTCCCCGAACGAGAGTTCGGTCAAACCAACCGATGGACGGTGTGAGTATCTGCCA CAGAACAATTCCAGTGATACGGTCATGGAGAATTTGGAGGAGCCAATTGTTCGAGCTGCT GACTTAATCGGTTCGATGGCCAAAAACATGGACGCCCAACAGGCAGCAGCTAGAGCCATA GATGCTCCTAACTGCTCCTTACAGGCGTCGGAAGGGAAAGACACGGACGGCGAGAACGCT ATGCCATATCTTGAGCTGAGCCTGAAGAGGTCGAGATCGACCGGGGAAGGTGCAGGCCCG ATCCAGGAGGAACAGAGGAACGTCGTGAGACGGTCAGACCTGTCGGCATTCACGAGGTGC AAAGCATAATATCAGTGTCCTTTGTGAATCCTGAAATCATCCGTATGTTGCATACTAACC GTTTTCATTCTTTGCAAGGTACAATATGTGTGCGGTCTCCAATCAAGGCGGGGCAGGGTT CGTCGGGAGCTGCTCACCCAACGGCGACAGCTCCGAGGCCGCGAAAACGGTTGCTGCTCA GATGAAGCAGGGCTCTAACGGCAGCAGCAACAACAATGACATGGGCTCCACCACGAAGAG CGTGGTGACCAAGCCCTGTGGAAATAATAAGGTTTCGCCCATCAACGGCAACACACACAC GTCGGCGTTTCATCGTGTGCAGCCATGGACGCCAGCGACAGCAGCAGGAAAAGACAAGGC TGATGAAGTGAGCAAGAAGAACGTTGCAGCAGCAGCAGCAGCAGCGAAAGAAATGGGTTG TGAAGCACAGAGCAAACACCCCTGTGCAGCGGCCGATGACGTGAATGGTGGATCGGCAGG AGGCACTGCTCAGTCCAGTGTTGTCAATCCTTCGGGTCCGGTTGAAGGCCATACTGCCAA CTATGGTAGCAACTCATTCAGCAATAACAACACCAATAACGGGAGCACCGCAGCTACCAC TGCTGCTGCTGCTGCTGTACATGCTGAGACCGGTGGTGGCGTCGACAAAAGAAGTAACAT GATGAACATGAAACGGGAGCGCCGTGTGGCCGCCGTGAACAAGTTCAGAGAGAAGAGAAA AGAGAGGAACTTCGGGAAGAAGGTGCGTTACCAGAGCAGGAAGCGGCTGGCCGAGCAGCG CCCACGGGTGCGCTGGCAGTTCGTGCGGCAGCCGCCGGCGCCGGCGACCGTGGAGAGATA ACCTCCCGCCACGCACCTAGCTATACCTAGTACTCTACTAATTAGACAGCTGATTCTTGT GTCTTTGGCCATGGATCATTGGGAGCTCGTCTCATCTCCTGGAAGAAGAAGAATAACGAG TGACTCCTCCTGCCTGCCTTAGCGACCTACCATAGAACATGCCGGCGGAGGAGGACGAGG GCGATTGTACATAGTAGGAGCGTGTGGAGCCGATCAGACAGGCTCCCGCTCTTGAATGTA GCAGCAATTGACCAATCAATGTCTGAGCCTCTAGAATGGTAGTATGAGTGAGTATTGTGC TGTACACTTGTCATCAGCTTGGCCATGGCGGCAGCCTTGTCAGGTGTCATCAATCAACGC ATATTTGTGGTTTCTTTCTAGTTACCGGGCAGACATCATCATCGTACTTGTTGCAAATCT GTCTAACCT