- Transcript HORVU1Hr1G078110.5
- Transcript IDHORVU1Hr1G078110.5
- Gene IDHORVU1Hr1G078110
Barley RTD
Exon Structure of HORVU1Hr1G078110.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 519178691 | 519178182 | - |
| chr1H | 2 | 519179027 | 519178872 | - |
| chr1H | 3 | 519179204 | 519179131 | - |
| chr1H | 4 | 519179728 | 519179536 | - |
| chr1H | 5 | 519179986 | 519179923 | - |
| chr1H | 6 | 519180460 | 519180069 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g43582.1 | +2 | 7e-120 | 352 | 167/195 (86%) | protein|tRNA methyltran, putative, expressed |
| TAIR PP10 | AT1G16445 @ ARAPORT AT1G16445.1 @ TAIR |
+2 | 1e-84 | 261 | 122/197 (62%) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:5617811-5619303 FORWARD LENGTH=274 |
| BRACH PP3 | Bradi2g20250.1.p | +2 | 7e-137 | 394 | 202/220 (92%) | pacid=32772093 transcript=Bradi2g20250.1 locus=Bradi2g20250 ID=Bradi2g20250.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1389 bp)
>HORVU1Hr1G078110.5 1389 150831_barley_pseudomolecules TGTCAGACTTATACCCACGACAGGTATAGAAGAACACTTTTTTTATGTGCCCTATTTATT GTTCACCCGAGCTTATTATAACTAAATTAATACAAATTTTATATCAAGTGAGTGACATTT ATTTTGGAAAGGAGGGAATAGGTCTCATGAGGTGAAACGAGCACCTCTGAACCTGTTCTA TCTTTTCCCCTTTTGCCGCATTGCCGCCGCCGCGGTAGCAGCCATGCCTCCGCCGTCGCT GCCGCGCCCTCCTCTCTCGCTGCTCCTCCGCCGCCCCCAAAATCTATCCCCTCTCCGACG AGTCCCCAGCTCCATCCCGTCCCCTCTGCTCGTCCTGCCCAATCGGCGGCACCTCTCCGC CGCGCATCTCGCCGACCCACTCGTCGCCGCAGGGGTGGAGGAGGCGGTGGTGGGCTTCGT CACCGGCAAGCGCAAGGCCACCGAGGTAGCCCACGCGGTGTGGAGAAGCATTGTTCGGAA AGGAGATACGGTTGTTGATGCCACCTGCGGAAACGGGAATGATACGTTTGCTTTGCTTAA GATGGTGTCCGATGAAACTGGGCGAGGGCGTGTTTATGGGATGGACATCCAAGATTCCGC GATTGATAACACTTCCTCTTTTCTGAACATGGCCGTCGACACCCACGAGAAGGAGCTAGT CAAGTTGTTTTCCATATGTCACAGTAGAATGGAGGATATTGTTCCAAAAGGTTCTCCTGT CAGGCTTGTAGCATTCAATCTCGGCTACCTTCCAGGAGGAGATAAAACAATAATCACAGT ACCTAAGACCACTGAGCTCGCATTGCAAGCTGCCAGCAGAATTGTTAGCTCAGGGGGCCT CATAAGTGTGCTTGTCTACATTGGGCATCTGGGTGGAAGGGATGAACTTGATATTGTTGA ATCATTTGCGTCAAGCTTGCCTGTTGATACATGGGTGAGCTGCAAGTTTGAAATGGTTAA CAGGCCAGTTGCTCCAGTACTAGTTCTCCTGCACAAGAAATGATCGCAGTCCCACTGAAG CTCCACAAGTTTGGGAGTCCCTGTTGCGGTTGATGAATGAGAATTTCTGATTATGGTTAT GAGCTAGAAAAAGGAATTATGTAAAGGCTACAGTCAGCTGTAACTGGATGGTTGACACTG TGGTGACTATCTATAGAGGAGCTTGCAAGGGTCGTGATCTGGTGATTGCTGCCAGGGATT ACTCCCTTGATGCAACGTGCAATTTTCTGGCCTACTATGTTCACCGAAATGTCAGTGCTC ACGCAAATGACCCTTGATGCAATGTCTGTCAAGCTTAAAAATGCTGTGTAACTATATGCA TGTATCTTGAACACTGATATGTCATAAACCTGTGCTCCTTGGAAGCAGTACCAGCTGCCC ATTGGTGTG