- Transcript HORVU1Hr1G078110.3
- Transcript IDHORVU1Hr1G078110.3
- Gene IDHORVU1Hr1G078110
Barley RTD
Exon Structure of HORVU1Hr1G078110.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 519178691 | 519178162 | - |
| chr1H | 2 | 519179204 | 519178872 | - |
| chr1H | 3 | 519179728 | 519179536 | - |
| chr1H | 4 | 519179986 | 519179919 | - |
| chr1H | 5 | 519180303 | 519180069 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g43582.1 | +3 | 3e-84 | 176 | 84/93 (90%) | protein|tRNA methyltran, putative, expressed |
| TAIR PP10 | AT1G16445 @ ARAPORT AT1G16445.1 @ TAIR |
+3 | 3e-36 | 134 | 60/93 (65%) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:5617811-5619303 FORWARD LENGTH=274 |
| BRACH PP3 | Bradi2g20250.1.p | +3 | 5e-97 | 187 | 90/93 (97%) | pacid=32772093 transcript=Bradi2g20250.1 locus=Bradi2g20250 ID=Bradi2g20250.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1359 bp)
>HORVU1Hr1G078110.3 1359 150831_barley_pseudomolecules CGAGCACCTCTGAACCTGTTCTATCTTTTCCCCTTTTGCCGCATTGCCGCCGCCGCGGTA GCAGCCATGCCTCCGCCGTCGCTGCCGCGCCCTCCTCTCTCGCTGCTCCTCCGCCGCCCC CAAAATCTATCCCCTCTCCGACGAGTCCCCAGCTCCATCCCGTCCCCTCTGCTCGTCCTG CCCAATCGGCGGCACCTCTCCGCCGCGCATCTCGCCGACCCACTCGTCGCCGCAGGGGTG GAGGAGGCGGTGGTGGGCTTCGTCACCGGCAAGCGCAAGGCCACCGAGGTAGCCCACGCG TAGGGTGTGGAGAAGCATTGTTCGGAAAGGAGATACGGTTGTTGATGCCACCTGCGGAAA CGGGAATGATACGTTTGCTTTGCTTAAGATGGTGTCCGATGAAACTGGGCGAGGGCGTGT TTATGGGATGGACATCCAAGATTCCGCGATTGATAACACTTCCTCTTTTCTGAACATGGC CGTCGACACCCACGAGAAGGAGCTAGTCAAGTTGTTTTCCATATGTCACAGTAGAATGGA GGATATTGTTCCAAAAGGTTCTCCTGTCAGGTGAAGTTCTTTTACTTTCATTAGTTTTAG TTATATGATTCAGTGAAACAGTATCCTGTTATTGGTATCTCAAGTAACTACGATCCTGAA TATGTATTTTTAGGCTTGTAGCATTCAATCTCGGCTACCTTCCAGGAGGAGATAAAACAA TAATCACAGTACCTAAGACCACTGAGCTCGCATTGCAAGCTGCCAGCAGAATTGTTAGCT CAGGGGGCCTCATAAGTGTGCTTGTCTACATTGGGCATCTGGGTGGAAGGGATGAACTTG ATATTGTTGAATCATTTGCGTCAAGCTTGCCTGTTGATACATGGGTGAGCTGCAAGTTTG AAATGGTTAACAGGCCAGTTGCTCCAGTACTAGTTCTCCTGCACAAGAAATGATCGCAGT CCCACTGAAGCTCCACAAGTTTGGGAGTCCCTGTTGCGGTTGATGAATGAGAATTTCTGA TTATGGTTATGAGCTAGAAAAAGGAATTATGTAAAGGCTACAGTCAGCTGTAACTGGATG GTTGACACTGTGGTGACTATCTATAGAGGAGCTTGCAAGGGTCGTGATCTGGTGATTGCT GCCAGGGATTACTCCCTTGATGCAACGTGCAATTTTCTGGCCTACTATGTTCACCGAAAT GTCAGTGCTCACGCAAATGACCCTTGATGCAATGTCTGTCAAGCTTAAAAATGCTGTGTA ACTATATGCATGTATCTTGAACACTGATATGTCATAAACCTGTGCTCCTTGGAAGCAGTA CCAGCTGCCCATTGGTGTGACTGATAAAAACGATTGTTG