- Transcript HORVU1Hr1G078110.2
- Transcript IDHORVU1Hr1G078110.2
- Gene IDHORVU1Hr1G078110
Barley RTD
Exon Structure of HORVU1Hr1G078110.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 519178691 | 519178154 | - |
| chr1H | 2 | 519179027 | 519178872 | - |
| chr1H | 3 | 519179204 | 519179131 | - |
| chr1H | 4 | 519179728 | 519179536 | - |
| chr1H | 5 | 519179988 | 519179923 | - |
| chr1H | 6 | 519180260 | 519180069 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g43582.1 | +2 | 2e-119 | 348 | 165/193 (85%) | protein|tRNA methyltran, putative, expressed |
| TAIR PP10 | AT1G16445 @ ARAPORT AT1G16445.1 @ TAIR |
+2 | 6e-85 | 260 | 122/194 (63%) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:5617811-5619303 FORWARD LENGTH=274 |
| BRACH PP3 | Bradi2g20250.1.p | +2 | 1e-130 | 376 | 180/193 (93%) | pacid=32772093 transcript=Bradi2g20250.1 locus=Bradi2g20250 ID=Bradi2g20250.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1219 bp)
>HORVU1Hr1G078110.2 1219 150831_barley_pseudomolecules TTGCCGCCGCCGCGGTAGCAGCCATGCCTCCGCCGTCGCTGCCGCGCCCTCCTCTCTCGC TGCTCCTCCGCCGCCCCCAAAATCTATCCCCTCTCCGACGAGTCCCCAGCTCCATCCCGT CCCCTCTGCTCGTCCTGCCCAATCGGCGGCACCTCTCCGCCGCGCATCTCGCCGACCCAC TCGTCGCCGCAGAGGGGTGGAGGAGGCGGTGGTGGGCTTCGTCACCGGCAAGCGCAAGGC CACCGAGGTAGCCCACGCGGTGTGGAGAAGCATTGTTCGGAAAGGAGATACGGTTGTTGA TGCCACCTGCGGAAACGGGAATGATACGTTTGCTTTGCTTAAGATGGTGTCCGATGAAAC TGGGCGAGGGCGTGTTTATGGGATGGACATCCAAGATTCCGCGATTGATAACACTTCCTC TTTTCTGAACATGGCCGTCGACACCCACGAGAAGGAGCTAGTCAAGTTGTTTTCCATATG TCACAGTAGAATGGAGGATATTGTTCCAAAAGGTTCTCCTGTCAGGCTTGTAGCATTCAA TCTCGGCTACCTTCCAGGAGGAGATAAAACAATAATCACAGTACCTAAGACCACTGAGCT CGCATTGCAAGCTGCCAGCAGAATTGTTAGCTCAGGGGGCCTCATAAGTGTGCTTGTCTA CATTGGGCATCTGGGTGGAAGGGATGAACTTGATATTGTTGAATCATTTGCGTCAAGCTT GCCTGTTGATACATGGGTGAGCTGCAAGTTTGAAATGGTTAACAGGCCAGTTGCTCCAGT ACTAGTTCTCCTGCACAAGAAATGATCGCAGTCCCACTGAAGCTCCACAAGTTTGGGAGT CCCTGTTGCGGTTGATGAATGAGAATTTCTGATTATGGTTATGAGCTAGAAAAAGGAATT ATGTAAAGGCTACAGTCAGCTGTAACTGGATGGTTGACACTGTGGTGACTATCTATAGAG GAGCTTGCAAGGGTCGTGATCTGGTGATTGCTGCCAGGGATTACTCCCTTGATGCAACGT GCAATTTTCTGGCCTACTATGTTCACCGAAATGTCAGTGCTCACGCAAATGACCCTTGAT GCAATGTCTGTCAAGCTTAAAAATGCTGTGTAACTATATGCATGTATCTTGAACACTGAT ATGTCATAAACCTGTGCTCCTTGGAAGCAGTACCAGCTGCCCATTGGTGTGACTGATAAA AACGATTGTTGGTTTGGAT