Transcript Data
Barley RTD
Links



Exon Structure of HORVU1Hr1G078110.17

ChromosomeExonStartStopDirection
chr1H1519178691519178687-
chr1H2519179204519178872-
chr1H3519179728519179536-
chr1H4519179986519179923-
chr1H5519180299519180069-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g43582.1 +3 2e-70 182 85/109 (78%) protein|tRNA methyltran, putative, expressed
TAIR PP10 AT1G16445 @ ARAPORT
AT1G16445.1 @ TAIR		 +3 7e-38 134 68/131 (52%) Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:5617811-5619303 FORWARD LENGTH=274
BRACH PP3 Bradi2g20250.1.p +3 2e-81 214 114/134 (85%) pacid=32772093 transcript=Bradi2g20250.1 locus=Bradi2g20250 ID=Bradi2g20250.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (826 bp)

>HORVU1Hr1G078110.17 826 150831_barley_pseudomolecules
CACCTCTGAACCTGTTCTATCTTTTCCCCTTTTGCCGCATTGCCGCCGCCGCGGTAGCAG
CCATGCCTCCGCCGTCGCTGCCGCGCCCTCCTCTCTCGCTGCTCCTCCGCCGCCCCCAAA
ATCTATCCCCTCTCCGACGAGTCCCCAGCTCCATCCCGTCCCCTCTGCTCGTCCTGCCCA
ATCGGCGGCACCTCTCCGCCGCGCATCTCGCCGACCCACTCGTCGCCGCAGGGGTGGAGG
AGGCGGTGGTGGGCTTCGTCACCGGCAAGCGCAAGGCCACCGAGGTAGCCCACGCGGTGT
GGAGAAGCATTGTTCGGAAAGGAGATACGGTTGTTGATGCCACCTGCGGAAACGGGAATG
ATACGTTTGCTTTGCTTAAGATGGTGTCCGATGAAACTGGGCGAGGGCGTGTTTATGGGA
TGGACATCCAAGATTCCGCGATTGATAACACTTCCTCTTTTCTGAACATGGCCGTCGACA
CCCACGAGAAGGAGCTAGTCAAGTTGTTTTCCATATGTCACAGTAGAATGGAGGATATTG
TTCCAAAAGGTTCTCCTGTCAGGTGAAGTTCTTTTACTTTCATTAGTTTTAGTTATATGA
TTCAGTGAAACAGTATCCTGTTATTGGTATCTCAAGTAACTACGATCCTGAATATGTATT
TTTAGGCTTGTAGCATTCAATCTCGGCTACCTTCCAGGAGGAGATAAAACAATAATCACA
GTACCTAAGACCACTGAGCTCGCATTGCAAGCTGCCAGCAGAATTGTTAGCTCAGGGGGC
CTCATAAGTGTGCTTGTCTACATTGGGCATCTGGGTGGAAGGGATG