Transcript Data
Barley RTD
Links



Exon Structure of HORVU1Hr1G078110.16

ChromosomeExonStartStopDirection
chr1H1519178691519178568-
chr1H2519179027519178872-
chr1H3519179204519179131-
chr1H4519179728519179536-
chr1H5519180012519179923-
chr1H6519180237519180065-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g43582.1 +1 3e-123 352 168/196 (86%) protein|tRNA methyltran, putative, expressed
TAIR PP10 AT1G16445 @ ARAPORT
AT1G16445.1 @ TAIR		 +1 2e-87 261 122/197 (62%) Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:5617811-5619303 FORWARD LENGTH=274
BRACH PP3 Bradi2g20250.1.p +1 2e-139 393 203/231 (88%) pacid=32772093 transcript=Bradi2g20250.1 locus=Bradi2g20250 ID=Bradi2g20250.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (810 bp)

>HORVU1Hr1G078110.16 810 150831_barley_pseudomolecules
ATGCCTCCGCCGTCGCTGCCGCGCCCTCCTCTCTCGCTGCTCCTCCGCCGCCCCCAAAAT
CTATCCCCTCTCCGACGAGTCCCCAGCTCCATCCCGTCCCCTCTGCTCGTCCTGCCCAAT
CGGCGGCACCTCTCCGCCGCGCATCTCGCCGACCCACTCGTCGCCGCAGGTCCATGTCGT
GACCGGGATTTGGTTGCAGGGGTGGAGGAGGCGGTGGTGGGCTTCGTCACCGGCAAGCGC
AAGGCCACCGAGGTAGCCCACGCGGTGTGGAGAAGCATTGTTCGGAAAGGAGATACGGTT
GTTGATGCCACCTGCGGAAACGGGAATGATACGTTTGCTTTGCTTAAGATGGTGTCCGAT
GAAACTGGGCGAGGGCGTGTTTATGGGATGGACATCCAAGATTCCGCGATTGATAACACT
TCCTCTTTTCTGAACATGGCCGTCGACACCCACGAGAAGGAGCTAGTCAAGTTGTTTTCC
ATATGTCACAGTAGAATGGAGGATATTGTTCCAAAAGGTTCTCCTGTCAGGCTTGTAGCA
TTCAATCTCGGCTACCTTCCAGGAGGAGATAAAACAATAATCACAGTACCTAAGACCACT
GAGCTCGCATTGCAAGCTGCCAGCAGAATTGTTAGCTCAGGGGGCCTCATAAGTGTGCTT
GTCTACATTGGGCATCTGGGTGGAAGGGATGAACTTGATATTGTTGAATCATTTGCGTCA
AGCTTGCCTGTTGATACATGGGTGAGCTGCAAGTTTGAAATGGTTAACAGGCCAGTTGCT
CCAGTACTAGTTCTCCTGCACAAGAAATGA