Transcript Data
Barley RTD
Links



Exon Structure of HORVU1Hr1G063320.6

ChromosomeExonStartStopDirection
chr1H1454317765454317673+
chr1H2454318681454318456+
chr1H3454320945454320645+
chr1H4454321668454321426+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g33880.2 +1 5e-37 130 74/115 (64%) protein|cysteine proteinase inhibitor precursor protein, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g25507.1.p +1 1e-41 142 86/106 (81%) pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (863 bp)

>HORVU1Hr1G063320.6 863 150831_barley_pseudomolecules
GGCCTCGTGCGGGGCATGCTCGCCGCCGTCCGCGAGCGGGCCGAGGCCGAGGACGCCGCG
CGCTTCGCCGTCGCTGAGCACAACAGGAAGCAGGGTTCTGCATTGGAGTTTACACGGGTT
GTGGACGCGAAAAGGCAAGTGGTTGCTGGGACCTTGCACAACCTGATGGTGGAGGTAGTG
GATTCTGGAAAGAAAAGTATGTACAAGGCAAAGGTATGGGTGAAGCCGTGGCAAAATTTC
AAGGCGGTTGTCGAGTTCCGTCATGCCGGGGACTTCCAGTCTGAGTCTTCCGTTGCTTCT
GATGGTAGCACTGGGCAAGGCACACAAGGCGTGAAGGTTGCTTCCATGGAGTATGGAACT
GGAAGGCGTGAAGGTCGGAACATGAGGTTCTGAAATGTAGCTGCCAGCAACTTGTGAACT
TAAGTACTACTAGTAGTTTCCCCTGTGCAAAGTTTTTATCCACCGTTAGTCTGTTATCAA
AGTCTTCATCCCCTGTTAGATAGTACTACTATATGCTGTCACACGGACATTCTTTGAGCT
TTTGACAGTTTGACGTCTGAACTCTGTATATTTGTTTTAAAACGTGGTGACTCTGTATAT
TACATACTGTTCATGCCCAGGAATTACAAGGTTCGTGAGCAGCTTACAACACAACTTAGC
AAGCACAAATGGTGTTGCCCACTACACTCCCCAAGAACTACAAGTAGAAGAGGAGCAGAG
GATCATCCGATTGCCACGGGGAAGATCAAGACCATGGCTGCTCCACTGGGCTGAGAAGAA
GCAACTCCTTCCTTCTCTACTGCCGAAGAGGGCCCCAACCCTCACGTCCTGGCAGGACGC
CACACCGTTGGTAAGAAGAGGCG