- Gene HORVU1Hr1G063320
- Gene IDHORVU1Hr1G063320
- Location chr1H: 454317352 - 454321668
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
BART1_0-u04235 | 98.0 | + | + | 4315 | -88 | Partial-Overlap |
Transcripts from Gene HORVU1Hr1G063320
Transcript | Length(bp) | Description |
---|---|---|
HORVU1Hr1G063320.1 | 1041 | gene=HORVU1Hr1G063320 CDS=1-747 |
HORVU1Hr1G063320.2 | 1069 | gene=HORVU1Hr1G063320 CDS=2-580 |
HORVU1Hr1G063320.3 | 1031 | gene=HORVU1Hr1G063320 CDS=2-601 |
HORVU1Hr1G063320.4 | 573 | gene=HORVU1Hr1G063320 CDS=3-485 |
HORVU1Hr1G063320.5 | 537 | gene=HORVU1Hr1G063320 CDS=1-537 |
HORVU1Hr1G063320.6 | 863 | gene=HORVU1Hr1G063320 CDS=1-393 |
Exon Structure of HORVU1Hr1G063320
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os05g33880.1 | +2 | 3e-45 | 154 | 78/143 (55%) | protein|cysteine proteinase inhibitor precursor protein, putative, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi2g25507.1.p | +2 | 4e-60 | 192 | 103/155 (66%) | pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons