Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u0423598.0++4315-88Partial-Overlap




Transcripts from Gene HORVU1Hr1G063320

TranscriptLength(bp)Description
HORVU1Hr1G063320.11041gene=HORVU1Hr1G063320 CDS=1-747
HORVU1Hr1G063320.21069gene=HORVU1Hr1G063320 CDS=2-580
HORVU1Hr1G063320.31031gene=HORVU1Hr1G063320 CDS=2-601
HORVU1Hr1G063320.4573gene=HORVU1Hr1G063320 CDS=3-485
HORVU1Hr1G063320.5537gene=HORVU1Hr1G063320 CDS=1-537
HORVU1Hr1G063320.6863gene=HORVU1Hr1G063320 CDS=1-393



Exon Structure of HORVU1Hr1G063320


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g33880.1 +2 3e-45 154 78/143 (55%) protein|cysteine proteinase inhibitor precursor protein, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g25507.1.p +2 4e-60 192 103/155 (66%) pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons