Transcript Data
Barley RTD
Links



Exon Structure of HORVU1Hr1G063320.4

ChromosomeExonStartStopDirection
chr1H1454317765454317542+
chr1H2454318804454318456+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g33880.1 +3 4e-44 145 80/123 (65%) protein|cysteine proteinase inhibitor precursor protein, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g25507.1.p +3 5e-51 163 95/117 (81%) pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (573 bp)

>HORVU1Hr1G063320.4 573 150831_barley_pseudomolecules
GCTCGGGAGGAGCGACGATGGCCCGCCGCAGCGGCTGCTCCGTCGGCGCCGCGCTCCTCG
CCCTCGCCGCCCTCCTCGCCGCCTCGGCCGTCCCCGGGGCCGCCGGGTTCCACCTCGGCG
GCGACGAGAGCGGCCTCGTGCGGGGCATGCTCGCCGCCGTCCGCGAGCGGGCCGAGGCCG
AGGACGCCGCGCGCTTCGCCGTCGCTGAGCACAACAGGAAGCAGGGTTCTGCATTGGAGT
TTACACGGGTTGTGGACGCGAAAAGGCAAGTGGTTGCTGGGACCTTGCACAACCTGATGG
TGGAGGTAGTGGATTCTGGAAAGAAAAGTATGTACAAGGCAAAGGTATGGGTGAAGCCGT
GGCAAAATTTCAAGGCGGTTGTCGAGTTCCGTCATGCCGGGGACTTCCAGTCTGAGTCTT
CCGTTGCTTCTGATGGTAGCACTGGGCAAGGTATTCTTGGTCTCACTAGCTTTCTTAATA
TCTAAGGTGATAGTGTTGAATGTTATCAAGTATTAACTCTGTATCAAAATATAAAAACGT
CTTATATTTTGATACAGAGGTAGTACTATCTAG