Transcript Data
Barley RTD
Links



Exon Structure of HORVU1Hr1G063320.3

ChromosomeExonStartStopDirection
chr1H1454317765454317465+
chr1H2454318681454318456+
chr1H3454321148454320645+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g33880.2 +2 1e-43 149 83/125 (66%) protein|cysteine proteinase inhibitor precursor protein, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g25507.1.p +2 7e-49 162 95/117 (81%) pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (1031 bp)

>HORVU1Hr1G063320.3 1031 150831_barley_pseudomolecules
CCAAGAAGCAACGCGACGCAAGCAGGCAGGCAGACAGCCACCACACGCCGACGCCAAACC
CCGCGAACCAATCGGGAGCTCGGGAGGAGCGACGATGGCCCGCCGCAGCGGCTGCTCCGT
CGGCGCCGCGCTCCTCGCCCTCGCCGCCCTCCTCGCCGCCTCGGCCGTCCCCGGGGCCGC
CGGGTTCCACCTCGGCGGCGACGAGAGCGGCCTCGTGCGGGGCATGCTCGCCGCCGTCCG
CGAGCGGGCCGAGGCCGAGGACGCCGCGCGCTTCGCCGTCGCTGAGCACAACAGGAAGCA
GGGTTCTGCATTGGAGTTTACACGGGTTGTGGACGCGAAAAGGCAAGTGGTTGCTGGGAC
CTTGCACAACCTGATGGTGGAGGTAGTGGATTCTGGAAAGAAAAGTATGTACAAGGCAAA
GGTATGGGTGAAGCCGTGGCAAAATTTCAAGGCGGTTGTCGAGTTCCGTCATGCCGGGGA
CTTCCAGTCTGAGTCTTCCGTTGCTTCTGATGGTAGCACTGGGCAAGGCACACAAGGCGT
GAAGGTTGCTTCCATGGAGTATGGAACTGGAAGGCGTGAAGGTCGGAACATGAGGTTCTG
AAATGTAGCTGCCAGCAACTTGTGAACTTAAGTACTACTAGTAGTTTCCCCTGTGCAAAG
TTTTTATCCACCGTTAGTCTGTTATCAAAGTCTTCATCCCCTGTTAGATAGTACTACTAT
ATGCTGTCACACGGACATTCTTTGAGCTTTTGACAGTTTGACGTCTGAACTCTGTATATT
TGTTTTAAAACGTGGTGACTCTGTATATTACATACTGTTCATGCCCAGGTAAGTACATTA
TGGCATTATTAGTGTTGCCTTCATTTGTTCATTCATGTCCCGAAGGACAAGGCATGTGTT
CGGTGAACCTACATATATACAAGTCACCACTCGCTTTGTATAAAAAATGTAAGACCTTTT
TTGACAGTGACGTTGCCAAAAAAAAACGTCTTATATTCTAAAGGGTCGTCAAAACTCAAT
ACAAAACCAAG