- Transcript HORVU1Hr1G063320.2
- Transcript IDHORVU1Hr1G063320.2
- Gene IDHORVU1Hr1G063320
Barley RTD
Exon Structure of HORVU1Hr1G063320.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 454317665 | 454317465 | + |
| chr1H | 2 | 454317765 | 454317720 | + |
| chr1H | 3 | 454318681 | 454318456 | + |
| chr1H | 4 | 454319154 | 454319063 | + |
| chr1H | 5 | 454321148 | 454320645 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g33880.1 | +2 | 3e-45 | 154 | 78/143 (55%) | protein|cysteine proteinase inhibitor precursor protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g25507.1.p | +2 | 4e-60 | 192 | 103/155 (66%) | pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1069 bp)
>HORVU1Hr1G063320.2 1069 150831_barley_pseudomolecules CCAAGAAGCAACGCGACGCAAGCAGGCAGGCAGACAGCCACCACACGCCGACGCCAAACC CCGCGAACCAATCGGGAGCTCGGGAGGAGCGACGATGGCCCGCCGCAGCGGCTGCTCCGT CGGCGCCGCGCTCCTCGCCCTCGCCGCCCTCCTCGCCGCCTCGGCCGTCCCCGGGGCCGC CGGGTTCCACCTCGGCGGCGACGAGGACGCCGCGCGCTTCGCCGTCGCTGAGCACAACAG GAAGCAGGGTTCTGCATTGGAGTTTACACGGGTTGTGGACGCGAAAAGGCAAGTGGTTGC TGGGACCTTGCACAACCTGATGGTGGAGGTAGTGGATTCTGGAAAGAAAAGTATGTACAA GGCAAAGGTATGGGTGAAGCCGTGGCAAAATTTCAAGGCGGTTGTCGAGTTCCGTCATGC CGGGGACTTCCAGTCTGAGTCTTCCGTTGCTTCTGATGGTAGCACTGGGCAAGCTATCCT CAAGCTGTCCCTTCAAACCGACATGGCACCCAAGATGCACAGCAACGATAACACTGGACT TTCTGTTGACTCGTCCTCTTCTCAGGCACACAAGGCGTGAAGGTTGCTTCCATGGAGTAT GGAACTGGAAGGCGTGAAGGTCGGAACATGAGGTTCTGAAATGTAGCTGCCAGCAACTTG TGAACTTAAGTACTACTAGTAGTTTCCCCTGTGCAAAGTTTTTATCCACCGTTAGTCTGT TATCAAAGTCTTCATCCCCTGTTAGATAGTACTACTATATGCTGTCACACGGACATTCTT TGAGCTTTTGACAGTTTGACGTCTGAACTCTGTATATTTGTTTTAAAACGTGGTGACTCT GTATATTACATACTGTTCATGCCCAGGTAAGTACATTATGGCATTATTAGTGTTGCCTTC ATTTGTTCATTCATGTCCCGAAGGACAAGGCATGTGTTCGGTGAACCTACATATATACAA GTCACCACTCGCTTTGTATAAAAAATGTAAGACCTTTTTTGACAGTGACGTTGCCAAAAA AAAACGTCTTATATTCTAAAGGGTCGTCAAAACTCAATACAAAACCAAG