Transcript Data
Barley RTD
Links



Exon Structure of HORVU1Hr1G063320.1

ChromosomeExonStartStopDirection
chr1H1454317765454317352+
chr1H2454318681454318456+
chr1H3454319154454319063+
chr1H4454320953454320645+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g33880.1 +1 3e-44 151 85/143 (59%) protein|cysteine proteinase inhibitor precursor protein, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g25507.1.p +1 9e-62 196 118/155 (76%) pacid=32774294 transcript=Bradi2g25507.1 locus=Bradi2g25507 ID=Bradi2g25507.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (1041 bp)

>HORVU1Hr1G063320.1 1041 150831_barley_pseudomolecules
GGACAAATCGGCTCCGATCCACCGCCCGATCCGGGCCGTGGACGTCTGGGATGCCTCGAT
CCGTCGCTGTCCCCCACACGCCAACCGAACCTGCCCCACTCGCTTTCCCCAACCCAAGAA
GCAACGCGACGCAAGCAGGCAGGCAGACAGCCACCACACGCCGACGCCAAACCCCGCGAA
CCAATCGGGAGCTCGGGAGGAGCGACGATGGCCCGCCGCAGCGGCTGCTCCGTCGGCGCC
GCGCTCCTCGCCCTCGCCGCCCTCCTCGCCGCCTCGGCCGTCCCCGGGGCCGCCGGGTTC
CACCTCGGCGGCGACGAGAGCGGCCTCGTGCGGGGCATGCTCGCCGCCGTCCGCGAGCGG
GCCGAGGCCGAGGACGCCGCGCGCTTCGCCGTCGCTGAGCACAACAGGAAGCAGGGTTCT
GCATTGGAGTTTACACGGGTTGTGGACGCGAAAAGGCAAGTGGTTGCTGGGACCTTGCAC
AACCTGATGGTGGAGGTAGTGGATTCTGGAAAGAAAAGTATGTACAAGGCAAAGGTATGG
GTGAAGCCGTGGCAAAATTTCAAGGCGGTTGTCGAGTTCCGTCATGCCGGGGACTTCCAG
TCTGAGTCTTCCGTTGCTTCTGATGGTAGCACTGGGCAAGCTATCCTCAAGCTGTCCCTT
CAAACCGACATGGCACCCAAGATGCACAGCAACGATAACACTGGACTTTCTGTTGACTCG
TCCTCTTCTCAGGCACACAAGGCGTGAAGGTTGCTTCCATGGAGTATGGAACTGGAAGGC
GTGAAGGTCGGAACATGAGGTTCTGAAATGTAGCTGCCAGCAACTTGTGAACTTAAGTAC
TACTAGTAGTTTCCCCTGTGCAAAGTTTTTATCCACCGTTAGTCTGTTATCAAAGTCTTC
ATCCCCTGTTAGATAGTACTACTATATGCTGTCACACGGACATTCTTTGAGCTTTTGACA
GTTTGACGTCTGAACTCTGTATATTTGTTTTAAAACGTGGTGACTCTGTATATTACATAC
TGTTCATGCCCAGGTAAGTAC