Transcript Data
Barley RTD
Links



Exon Structure of HORVU1Hr1G049500.4

ChromosomeExonStartStopDirection
chr1H1366831852366831732-
chr1H2366832334366832002-
chr1H3366832934366832797-
chr1H4366833686366833557-
chr1H5366833953366833931-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os10g38950.1 +1 9e-147 416 196/208 (94%) protein|CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
TAIR PP10 AT4G01370 @ ARAPORT
AT4G01370.1 @ TAIR		 +1 4e-135 385 176/208 (85%) Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376
BRACH PP3 Bradi3g32000.1.p +1 2e-151 427 204/208 (98%) pacid=32819051 transcript=Bradi3g32000.1 locus=Bradi3g32000 ID=Bradi3g32000.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (745 bp)

>HORVU1Hr1G049500.4 745 150831_barley_pseudomolecules
CGAGGCGCCTACGGCATTGTCTGCGCGGCTGTTAGCTCGGATACAGGAGAGGAGGTTGCG
ATCAAGAAGATTGGAAATGCGTTTGACAACCACATCGACGCCAAACGGACGCTTAGAGAA
ATAAAGCTTCTTCGCCACATGGACCATGAGAATATTCTTGCCATGAAGGATTTAATACGC
CCCCCAAGAAGAGATGATTTTAAGGATGTGTACATTGTTACTGAGTTGATGGACACTGAT
CTCCATCAGATCATTCGCTCAAATCAATCATTGACTGATGACCATTGCCAGTACTTCTTG
TATCAATTGCTTCGAGGGCTAAAATATGTGCACTCAGCAAATGTCTTGCACCGTGATCTG
AAGCCAAGCAATTTGTTCCTAAACGCAAATTGCGATCTCAAGATTGCTGACTTTGGGCTT
GCAAGGACCACTTCAGAAACTGATCTCATGACAGAGTATGTGGTCACTCGTTGGTACCGA
GCGCCAGAGTTGCTGTTGAACTGTTCACAATATACTGCTGCTATTGATGTCTGGTCAGTT
GGGTGCATACTTGGTGAAATTATTACTCGTCAACCCCTGTTTCCTGGAAGAGATTACATC
CAACAGTTAAAGTTAATCACCGAGGATAATGGGATCTTTCTTGGCACATCTAACTGTATT
GTTAGACCTGTTTCGCATCTTGTGTTTGAATAGAAGTTTTTACTTTTACACAAACACTGG
ATTAGTGAATGCATTTTGCATCTGG