Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u03305	97.8	-	-	4173	-95	Containing

Transcripts from Gene HORVU1Hr1G049500

Transcript	Length(bp)	Description
HORVU1Hr1G049500.1	1734	gene=HORVU1Hr1G049500 CDS=247-1380
HORVU1Hr1G049500.2	1785	gene=HORVU1Hr1G049500 CDS=247-1380
HORVU1Hr1G049500.3	1466	gene=HORVU1Hr1G049500 CDS=1-1113
HORVU1Hr1G049500.4	745	gene=HORVU1Hr1G049500 CDS=1-693

Exon Structure of HORVU1Hr1G049500

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os10g38950.1	+1	0.0	727	343/363 (94%)	protein|CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
TAIR PP10	AT4G01370 @ ARAPORT AT4G01370.1 @ TAIR	+1	0.0	639	295/356 (83%)	Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376
BRACH PP3	Bradi3g32000.1.p	+1	0.0	750	359/363 (99%)	pacid=32819051 transcript=Bradi3g32000.1 locus=Bradi3g32000 ID=Bradi3g32000.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons