- Transcript HORVU1Hr1G049500.3
- Transcript IDHORVU1Hr1G049500.3
- Gene IDHORVU1Hr1G049500
Barley RTD
Exon Structure of HORVU1Hr1G049500.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 366830525 | 366830181 | - |
| chr1H | 2 | 366831202 | 366831022 | - |
| chr1H | 3 | 366831460 | 366831277 | - |
| chr1H | 4 | 366832334 | 366832002 | - |
| chr1H | 5 | 366832934 | 366832797 | - |
| chr1H | 6 | 366833841 | 366833557 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g38950.1 | +1 | 0.0 | 637 | 303/319 (95%) | protein|CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed |
| TAIR PP10 | AT4G01370 @ ARAPORT AT4G01370.1 @ TAIR |
+1 | 0.0 | 559 | 261/314 (83%) | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376 |
| BRACH PP3 | Bradi3g32000.1.p | +1 | 0.0 | 655 | 315/319 (99%) | pacid=32819051 transcript=Bradi3g32000.1 locus=Bradi3g32000 ID=Bradi3g32000.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1466 bp)
>HORVU1Hr1G049500.3 1466 150831_barley_pseudomolecules GTTCCGTGCCGCCGTGCGGCGGTGTCTGTCCAGATTTGGCACACATGCGGGTGTGACGTT TTAGGCATAAAGTTATGTGAGGAAGTGAGTCACCCCACAAGGAGGGTTGCAGTAGAAGTG CTTATATTTGCCTATTCTGTTCCCTACTTTTGCAGCGCGGCTGTTAGCTCGGATACAGGA GAGGAGGTTGCGATCAAGAAGATTGGAAATGCGTTTGACAACCACATCGACGCCAAACGG ACGCTTAGAGAAATAAAGCTTCTTCGCCACATGGACCATGAGAATATTCTTGCCATGAAG GATTTAATACGCCCCCCAAGAAGAGATGATTTTAAGGATGTGTACATTGTTACTGAGTTG ATGGACACTGATCTCCATCAGATCATTCGCTCAAATCAATCATTGACTGATGACCATTGC CAGTACTTCTTGTATCAATTGCTTCGAGGGCTAAAATATGTGCACTCAGCAAATGTCTTG CACCGTGATCTGAAGCCAAGCAATTTGTTCCTAAACGCAAATTGCGATCTCAAGATTGCT GACTTTGGGCTTGCAAGGACCACTTCAGAAACTGATCTCATGACAGAGTATGTGGTCACT CGTTGGTACCGAGCGCCAGAGTTGCTGTTGAACTGTTCACAATATACTGCTGCTATTGAT GTCTGGTCAGTTGGGTGCATACTTGGTGAAATTATTACTCGTCAACCCCTGTTTCCTGGA AGAGATTACATCCAACAGTTAAAGTTAATCACCGAGCTGATAGGATCACCAGATGATTCA AGCCTGGGATTTCTTCGGAGTGATAATGCACGAAGATACATGAAGCAATTACCACAGTAC CCAAGGCAGGACTTCCGCCTGCGCTTCCGCAACATGTCTGATGGTGCAGTTGATCTGTTA GAGAGGATGCTGGTGTTTGACCCAAGCAGACGCATTACTGTTGATGAGGCTCTGCATCAC CCATACTTGGCTTCTCTTCATGACATCAATGAAGAACCCACTTGCCCGGCACCTTTCAGC TTTGATTTTGAGCAACCATCTTTTACAGAAGAACATATGAAAGAGCTCATCTGGAGGGAA ACTTTAGCATTTAACCCTGATCCGCCCTACTAAGAGCCAAGACCAAATTACCAGCTGAGG GCATTGAAGATCTACCTCTAGCTCTAGTGAAGCCGATATTTCCATGTCTTGTGCATCTAT TTATTTTATGCTCGCTTATTGGGCGAATGGGCATGGATTATTTGTTGCTGTAACTATTTC TTTTGTGGCCTTTCTGAAGAAACGACATTTGTATGAGATGGCTTGTATTATACCGGTTGA TTGAATAAACTGGTCTTGTGTATCTAAAGCTTGTAATTTTGTGTACACTTATCTAAACAT CCCATGTATATCTGAGTTAACATATTCCCTTTTATTATCTCAAGCATGTAATTTGGCATT TTGTGATCGGTCGTATCGAAGTTGCC