- Transcript HORVU1Hr1G049500.2
- Transcript IDHORVU1Hr1G049500.2
- Gene IDHORVU1Hr1G049500
Exon Structure of HORVU1Hr1G049500.2
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr1H | 1 | 366830576 | 366830180 | - |
chr1H | 2 | 366831202 | 366831022 | - |
chr1H | 3 | 366831460 | 366831277 | - |
chr1H | 4 | 366832334 | 366832002 | - |
chr1H | 5 | 366832934 | 366832797 | - |
chr1H | 6 | 366833686 | 366833557 | - |
chr1H | 7 | 366834352 | 366833931 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os10g38950.1 | +1 | 0.0 | 727 | 343/363 (94%) | protein|CGMC_MAPKCMGC_2_ERK.14 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed |
TAIR PP10 | AT4G01370 @ ARAPORT AT4G01370.1 @ TAIR |
+1 | 0.0 | 639 | 295/356 (83%) | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376 |
BRACH PP3 | Bradi3g32000.1.p | +1 | 0.0 | 750 | 359/363 (99%) | pacid=32819051 transcript=Bradi3g32000.1 locus=Bradi3g32000 ID=Bradi3g32000.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1785 bp)
>HORVU1Hr1G049500.2 1785 150831_barley_pseudomolecules ATATCTATTTTTTCTTCTTCCTCTTTTCCGCAAACGTCGCCCCACGCGCGCCGTCTCCGT CCTCGCGTCCGCTCGCTCCCATCCTCATTCCCCAGTCGCCGCCCAAGTCAAAAAGAGGGG GAAGCATCTCCACCAGAGTCCCCAGCCCATCAACGACTAGTCGCTGCGGGGCACCAACCC TAGAGCCCAACCCTACTCTCCCCCCCTCTCTGGCTCCTCCCCCTCGCGAGCGGCGACGAA GAAGCCATGGACACCTCCGGCGGCGGCGGCGGCGCCGCGGGCGGGGCCGCGCAGATCCAG GGGATGGCGACGCACGGCGGCCGCTACGTGCTCTACAACGTCTACGGCAACCTCTTCGAG GTCGCCTCCAAGTACGCCCCTCCCATCCGCCCCATCGGCCGAGGCGCCTACGGCATTGTC TGCGCGGCTGTTAGCTCGGATACAGGAGAGGAGGTTGCGATCAAGAAGATTGGAAATGCG TTTGACAACCACATCGACGCCAAACGGACGCTTAGAGAAATAAAGCTTCTTCGCCACATG GACCATGAGAATATTCTTGCCATGAAGGATTTAATACGCCCCCCAAGAAGAGATGATTTT AAGGATGTGTACATTGTTACTGAGTTGATGGACACTGATCTCCATCAGATCATTCGCTCA AATCAATCATTGACTGATGACCATTGCCAGTACTTCTTGTATCAATTGCTTCGAGGGCTA AAATATGTGCACTCAGCAAATGTCTTGCACCGTGATCTGAAGCCAAGCAATTTGTTCCTA AACGCAAATTGCGATCTCAAGATTGCTGACTTTGGGCTTGCAAGGACCACTTCAGAAACT GATCTCATGACAGAGTATGTGGTCACTCGTTGGTACCGAGCGCCAGAGTTGCTGTTGAAC TGTTCACAATATACTGCTGCTATTGATGTCTGGTCAGTTGGGTGCATACTTGGTGAAATT ATTACTCGTCAACCCCTGTTTCCTGGAAGAGATTACATCCAACAGTTAAAGTTAATCACC GAGCTGATAGGATCACCAGATGATTCAAGCCTGGGATTTCTTCGGAGTGATAATGCACGA AGATACATGAAGCAATTACCACAGTACCCAAGGCAGGACTTCCGCCTGCGCTTCCGCAAC ATGTCTGATGGTGCAGTTGATCTGTTAGAGAGGATGCTGGTGTTTGACCCAAGCAGACGC ATTACTGTTGATGAGGCTCTGCATCACCCATACTTGGCTTCTCTTCATGACATCAATGAA GAACCCACTTGCCCGGCACCTTTCAGCTTTGATTTTGAGCAACCATCTTTTACAGAAGAA CATATGAAAGAGCTCATCTGGAGGGAAACTTTAGCATTTAACCCTGATCCGCCCTACTAA GAGCCAAGATTGTTTCCAGGCATTCAAGTTAATTCATGTTGTTTTCCTTGGGAGCACAGA CCAAATTACCAGCTGAGGGCATTGAAGATCTACCTCTAGCTCTAGTGAAGCCGATATTTC CATGTCTTGTGCATCTATTTATTTTATGCTCGCTTATTGGGCGAATGGGCATGGATTATT TGTTGCTGTAACTATTTCTTTTGTGGCCTTTCTGAAGAAACGACATTTGTATGAGATGGC TTGTATTATACCGGTTGATTGAATAAACTGGTCTTGTGTATCTAAAGCTTGTAATTTTGT GTACACTTATCTAAACATCCCATGTATATCTGAGTTAACATATTCCCTTTTATTATCTCA AGCATGTAATTTGGCATTTTGTGATCGGTCGTATCGAAGTTGCCG