Barley RTD

Transcript HORVU1Hr1G019900.1

Transcript IDHORVU1Hr1G019900.1
Gene IDHORVU1Hr1G019900

Transcript Data

|Exon Structure|
|Homologues|
|Barley GBrowse|
|CDS Sequence|

Barley RTD

Links

Exon Structure of HORVU1Hr1G019900.1

Chromosome	Exon	Start	Stop	Direction
chr1H	1	75453765	75453310	+

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os11g41620.1	+1	3e-49	169	83/148 (56%)	protein\|transposon protein, putative, unclassified, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	None	-	-	-	-	-

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

CDS Sequence (456 bp)

>HORVU1Hr1G019900.1 456 150831_barley_pseudomolecules
ATGCCCTTAAAGAAATTTGGTGCAAAAGTGCAGACGGAGTACAATATGCTTCCAACCAGA
AGTAAGATAGGAAGGGCAAGAAGGGCAGCAGTGAAGCAGATTAGAGGTGAAGATGATGAC
CAGTACAAACTTCTGTTGGATTTTGGCCAGGAACTTAGAAGATCTAACCCAGACAGCAAG
TTCTATCTTTGCACAAAGGAAGTGAAGAAGGAGAAGCATCCATTCCCAAAAGAACACTTC
TCTACTCTATACTGGTCCTATGATGCTTGCAAGAGAGGCTTCCTTATGGGTTGTAGGCAA
ATAATCTTCGTTCATGGCTGCCACATAAAGACAAGGTACAAAGGGAATTTGCTAACTGCA
GTTGGAATTGACCCAAATGACTGCATATTTTCTGTTGCTTTTGGTTTGGTGGAAGTTGAG
TCAACTGATAGTTGGGATGGTTTCTGGCTAGTTTAA