Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u01504	12.1	+	+	456	-3328	Containing

Transcripts from Gene HORVU1Hr1G019900

Transcript	Length(bp)	Description
HORVU1Hr1G019900.1	456	gene=HORVU1Hr1G019900 CDS=1-456

Exon Structure of HORVU1Hr1G019900

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os11g41620.1	+1	3e-49	169	83/148 (56%)	protein|transposon protein, putative, unclassified, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	None	-	-	-	-	-

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons