- Transcript HORVU0Hr1G021100.1
- Transcript IDHORVU0Hr1G021100.1
- Gene IDHORVU0Hr1G021100
Barley RTD
Exon Structure of HORVU0Hr1G021100.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chrUn | 1 | 110453939 | 110453749 | - |
| chrUn | 2 | 110454143 | 110454053 | - |
| chrUn | 3 | 110455196 | 110454393 | - |
| chrUn | 4 | 110455515 | 110455273 | - |
| chrUn | 5 | 110456167 | 110455621 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06140.1 | +2 | 9e-127 | 391 | 286/565 (51%) | protein|no apical meristem protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g16480.1.p | +2 | 1e-152 | 460 | 323/630 (51%) | pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1876 bp)
>HORVU0Hr1G021100.1 1876 150831_barley_pseudomolecules NNNNNNNNNNNNNNNNNNNNNNTTCGTGGTGAACTCTGGGTCCGTGATGGTCAAGGCCCT GCTCTTCCAAGCGAGCAGGATGCCGCCCCGCGTGCCCTAGGCCGATAGGTAGTGTAGTCG TCAAACTCTGAACCGAGGGTTTGTAGCACAATGGACGAACAAATCAATGCCATCTTTGTT TCTTGAAAGCAAACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGG CTACTCTCCCACTCCATCTCGTTCTACTCCTGACAATATGGAAGCAAACGAGGAAGCTAT CACACTCATAAATAAGGAATCTCCTGAATCTGGTCTGCATGGATGTCCAATTGAGTTGCC ATGTACAATTGAAACTCTGGGCGCCCCGGTTACAAGGTGGCTTGCAGACCGAAATGGCAA TCCCGGGACAGATGAAGCAAACGATGTAGGCATGCCTTTTCATCGTGGTGTCGATGAAAG TCCCAAGCAGGCCGATCTGTCAGTTGGCTCTCTGGCTCACCTAATTGATTCACAGACGAA AAATCTCGGTTCTCATGAGTTTGCCACCGTTTCTGCCCCCATGTTACCGGATGACCATTT GGACAATCTTCTACTTCATTTAACTCATAATTCGGTGGAAGATTTCTTGAATGAAACAAT TGCTGATCCAGACGAGCTTTCGTCAACTGCATGTAAAGTTCAGTACGATTCAGACAATGG GATTATGCAGGCTCAGGGTGATTTGCTATATGATGATCCAAACTGGTTTGGTAATTTTCT GTCAGATGACACAAATCCACAACCAAGTGGATTATATGAGAATGCACCATTGCTTCCTTA TGGCACTAATCCTGATGTACTTTCCATGGACTCCGGCGACGAGTCCTTGCAAGATTTGTT CAATAGCATGGACGATTCAAGTTGGCAGAATGATGTATGGAGCAACGGATTTGGATTTAA TCCCATGCATCAGCAGTTACAGTCTACTGTGCATCCGAACTATATATTTTCTCAACAGGG CATTGCACGCAGGAGGCTTCGGCTACTAGATTCATTGTCTGATGTCAATGTTGAGAGTAG AGAGAGCATGACCAGAGATGAACATGAAGATGAAGAATCAGATATTGTAACTTCGAAATA TAGGAGTGAATCTGTTGAATCATCTGCAGATGTAGATGAGTCTGAGTCAACCGGGGTTAC TATTATGAGCCGGCGCCGTGCTCTAACTAAAAGTGTGCCTTCCGACCGCGATGATGCTGA ATCAACGGGGATTACTATTATGGGCCGGCGCTCTGCTCCAAGTTCAAATGCGCCTTCCGA TGAAGCTGATGCTGAGGCAACAGGGATTAATATTGTGAGCCGACGCACTGCTCCAAGTTC AAGCACAGATAACTCATTTACCACCGAACAGGGGACTGCAGTGCGAAGGTTGCGGCTACA ATCGAACCTTGACGCAGGATCATGTTCCAGTGTTGATGGTTTGTCAAGTTGCATTATAGA ACATGGAAGTGAAAACGAAGGGCTGGAAGCTGAGATTGACGAGCATGTGGATACAAACTT CCTTGATGATGTTGGTTTTGCTGGCAACAGTCATGCTGATGAGCATATGTACATGCCTGA TCATGAAGCTAATTCTCTTACGAGGCTGCGGAAGACAGCAGAGAAAAGCGACAAGGAGAA CAAGCAGGAGTGTGGTCCCCAGTCACATGTGAGAGCACCAAGGAAGAGGGGAGGCTTCGC AGCACGCATGATCTTGCCAGTTCTGTCGGTGGCTCTTCTCGTTCTTGTTAGCGTTGGGGT CTACGGATGGGCATAA