Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u59110	77.2	-	-	2131	-343	Partial-Overlap

Transcripts from Gene HORVU0Hr1G021100

Transcript	Length(bp)	Description
HORVU0Hr1G021100.1	1876	gene=HORVU0Hr1G021100 CDS=167-1876

Exon Structure of HORVU0Hr1G021100

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os08g06140.1	+2	9e-127	391	286/565 (51%)	protein|no apical meristem protein, putative, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi3g16480.1.p	+2	1e-152	460	323/630 (51%)	pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons