- Transcript HORVU0Hr1G015560.3
- Transcript IDHORVU0Hr1G015560.3
- Gene IDHORVU0Hr1G015560
Barley RTD
Exon Structure of HORVU0Hr1G015560.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chrUn | 1 | 84398719 | 84396129 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g07200.2 | +1 | 0.0 | 774 | 364/442 (82%) | protein|protein-O-fucosyltransferase 1, putative, expressed |
| TAIR PP10 | AT3G05320 @ ARAPORT AT3G05320.1 @ TAIR |
+1 | 2e-162 | 480 | 255/456 (56%) | Symbols: | O-fucosyltransferase family protein | chr3:1513558-1514895 REVERSE LENGTH=445 |
| BRACH PP3 | Bradi3g05130.3.p | +1 | 0.0 | 838 | 395/442 (89%) | pacid=32821848 transcript=Bradi3g05130.3 locus=Bradi3g05130 ID=Bradi3g05130.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2591 bp)
>HORVU0Hr1G015560.3 2591 150831_barley_pseudomolecules ATTTTTGGTTCCACATTCATTTAGTGAAGCTCCAGTCCGCAGTCTGTCAGGCTAGCTTGG TGACTTCCATATTAGATGATGAATTATTATTTTTGAATAACTTATATGAAATGTTTTCTG TGAATAATTTACATGATGAAATTCGATAACGGGAACTTGGATATACAAAAGCTGTTGGCT TAAGATTATTAACTCGTTATAGTGAGAATGTATTAGTATTACTTTGCTGTTGTATTCTTG CTTTACCGGTGGTAGACACCGCCATATATCTGACATTTGGCTGTGCGTTCGTAATTGATG CGAACCATGCGACTCTAGGTGAACCCACACCAGGGTATCTAATGAAAACTTAATGTGCAT GTTACTATATGTGGTTTGTAAAATAATACTATATTCCTTTAGTATGGTTAATTGGTTAAC ACTTTGCTGTTAAGACACTGAAAAAATGTTCTTTATGTGACCACTTAGTAGATTTCTTAA TTGTATAAAGTGTGGCAGTGTAATAACCTTGCATTGTGTCTTTGTTTTACTTCTCATTGT ATTTGCAGTCTTGTGGAGCATACGCTAAATTGTCAGCAGAAGGGTCAAAGCCTATGATTG TAACAGCATGAACCGAGCTGGAAACCTGATTTACTCATTGCCCAGGAAGAACTGGTGAAG CCATCCAAGCGTATTTGGTTATTGATTCCATTATATTGCAGCACAGTATGTACTTCCGCT GGGCGATAAAGTTGACCTGGTAGAATGAGAAGGAATTAAAGAACTGTTTCAATGAACATC CTACTAGACCTTAAGCATCTCAAGCACATTAGCTTGCCGGCGAGGCTTATTATTTGCAAG TGCCTTCTCATAGTGATTGGCCTTATTGTATTGAGAGCAATTATCTCCCCTTTTCTTGCC ATTAGCTTGTCTGAGAAGAGTTTTTATGAGTCACCAACCCTTGACTTGTTCCCTGGAGTT AGGAAAGGCAAGTTTGTTGAGGTCCCACAGATTATATGGGGATTGAACAATCAGAAGATT GCATTTGCCAGAGCATGCTTGACGGCAAGATTCCTGAACCGTTCTCTACTCATGCCAAGT CTGAGTGCTTCGCTTTTCTACAAAGAGGTTGACTTGCTGCAGCCTATTGCTTTCGACAAG GTATTTGACCTTAATAAGTTCAATGCCCATTGTCATGGGTTTGTAAGGGTAGCTCGGTAT TCAGAAGTTTCGAATCGTACCGAGCCTTTCAAACTTCAAAAGGGCAGTGGTAGGAGGTGG ACAGTGGAGAGAGACTTGGATCAACTGCAGCAATCCAGATTGGGGGAGGCCGATGGCTTT GAAGTGATTCATGTCACTGGGAAGCATCCATTTCTATGGCCTGACCATTGGCCAGTGAAA GACTATGCCAGGATCTTCGATTGCCTTGCTGTAGCTCCTGAGATAGAAACTGAAGTTGTC AGGGTCGTATCGAAGATTAAAGATGCAGGGAAAAAAGCAAGGCATGATGCTGCCATTTCT CATAATAAGAAGAGGATAGATAGTTTGACAAATCTTCCTGTGCAGTACATTGCTGTTCAC ATGAGAATAGAGAAAGATTGGATGATCCATTGCAAGAAGTGGGAGCAGCGGTCCAATTTA AAGGAAATCTGTAGCAGCAAAGGAGAGATCATTCATAAGGTCTCACAGATCACTGACCTA CGTCGCCCGCTTGTAGTTTATCTTGCAGTAGCTGACAGCCTTCTAGAAGACGATTCAGTA ACCAGTGGTTGGAGAGTTGGTATGGTTGCTTATGAGAAGAAGAAACTTGGAGTTACTGAC ATATATGATAGGCAGCCTTACCTTATAAAGTCTGCCATTGACTTTGAGGTATGTGCAAGA GCGGATGTGTTTGTTGGCAATAGTTTCTCGACATTTTCCAACCTTGTAGTGTTGTCCAGA ACAGAAAGGCTATATAAATTAGGGAAGGCAAGCTCATGTGGTGAGGATGTTGGGCTGTCG TCCTATGCATACAATGTCATCGGAGATGATGGTGGGCCACAGAAATGGATGACAGATATG TTGGACACAAGTCTTCAGCGCATAAGTTATGGAACGAATAACATCTCCTGCCACTGATCT TTTAACACACTAGCATCTGACCGAAATACAACCGTGGACAGGAAGATAGTTTTTATGGCT GAATCTTGTCAAGAGACGAGCAGGTGCAGCAGCTCGACGGTACTTTCCATGTTAGAATCT AGACAAGTCGATCTGGCATGTCACACTTCTGAAATGACTTTGGCCAAGAATTCCTTGTGT GTTCTGTGAGTGTGTACAAAAGTTGTTTCCTGAGCAGCATTGTGCTGAACAGTTTTTAGT TTGCAGAGCTAAACGTTATGTCATGCATTGTTTGCATTCTGTGGTTCACTGGGAGGAGCT TGATTCACACTGTTGAGAATCTGACGCTGTCACTTTCACATGAAACATTTGTATCAAGTG TATTCGTTCGTTTATGCTGTTAAAACTCTTGATTCTGTAGCACCTTGTAATTTCCTTGAG AAAGATACTTTGGATATGTTCCTTCTCAACAAAATGCTCAGTTGGTGTAATCACAGTCAC CATATATCGAC