Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u58660	83.6	+	+	3161	-620	Containing

Transcripts from Gene HORVU0Hr1G015560

Transcript	Length(bp)	Description
HORVU0Hr1G015560.1	2538	gene=HORVU0Hr1G015560 CDS=621-1946
HORVU0Hr1G015560.2	2530	gene=HORVU0Hr1G015560 CDS=613-1938
HORVU0Hr1G015560.3	2591	gene=HORVU0Hr1G015560 CDS=772-2097

Exon Structure of HORVU0Hr1G015560

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os02g07200.2	+1	0.0	774	364/442 (82%)	protein|protein-O-fucosyltransferase 1, putative, expressed
TAIR PP10	AT3G05320 @ ARAPORT AT3G05320.1 @ TAIR	+1	2e-162	480	255/456 (56%)	Symbols: | O-fucosyltransferase family protein | chr3:1513558-1514895 REVERSE LENGTH=445
BRACH PP3	Bradi3g05130.3.p	+1	0.0	838	395/442 (89%)	pacid=32821848 transcript=Bradi3g05130.3 locus=Bradi3g05130 ID=Bradi3g05130.3.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons