- Transcript HORVU0Hr1G015560.1
- Transcript IDHORVU0Hr1G015560.1
- Gene IDHORVU0Hr1G015560
Barley RTD
Exon Structure of HORVU0Hr1G015560.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chrUn | 1 | 84396053 | 84395657 | + |
| chrUn | 2 | 84398817 | 84396677 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g07200.2 | +3 | 0.0 | 774 | 364/442 (82%) | protein|protein-O-fucosyltransferase 1, putative, expressed |
| TAIR PP10 | AT3G05320 @ ARAPORT AT3G05320.1 @ TAIR |
+3 | 1e-162 | 480 | 255/456 (56%) | Symbols: | O-fucosyltransferase family protein | chr3:1513558-1514895 REVERSE LENGTH=445 |
| BRACH PP3 | Bradi3g05130.3.p | +3 | 0.0 | 838 | 395/442 (89%) | pacid=32821848 transcript=Bradi3g05130.3 locus=Bradi3g05130 ID=Bradi3g05130.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2538 bp)
>HORVU0Hr1G015560.1 2538 150831_barley_pseudomolecules CCTTGACCTACCGGCATCGTGTTTTTCCCCTTCCCGAATTTCTCTCCCCCCTTCCCATTT CCGGTGGTGATCTGCCTCCGACGACCGGAACCACGTCAAGCGTTTGACGCTCTCATCTTC TACCCTCTACGCTAGATCGAATCACTCTTTCTACCTGGATCAGGCCTCACGGAGTAGCGG AGGAGGAGGAACGGCGGGGCCTTGGAGAGAGGGCTGGGCGCTTCCGACGGCGGCGGAGAC AGAGCCGTGCCTGCCGGCTGCAGAGACGATTGGGCGTGGAGGTGAGGCGTAGACCTGGCC CATTCTAGGTCCGGCCGAGGGCAGCAATTTGGGGGACAGCAGCGCACAGTTGCAGAGTTT CGGTGAACACAAGTGATTCAAAAGACCAAGTAAGAAGTCTTGTGGAGCATACGCTAAATT GTCAGCAGAAGGGTCAAAGCCTATGATTGTAACAGCATGAACCGAGCTGGAAACCTGATT TACTCATTGCCCAGGAAGAACTGGTGAAGCCATCCAAGCGTATTTGGTTATTGATTCCAT TATATTGCAGCACAGTATGTACTTCCGCTGGGCGATAAAGTTGACCTGGTAGAATGAGAA GGAATTAAAGAACTGTTTCAATGAACATCCTACTAGACCTTAAGCATCTCAAGCACATTA GCTTGCCGGCGAGGCTTATTATTTGCAAGTGCCTTCTCATAGTGATTGGCCTTATTGTAT TGAGAGCAATTATCTCCCCTTTTCTTGCCATTAGCTTGTCTGAGAAGAGTTTTTATGAGT CACCAACCCTTGACTTGTTCCCTGGAGTTAGGAAAGGCAAGTTTGTTGAGGTCCCACAGA TTATATGGGGATTGAACAATCAGAAGATTGCATTTGCCAGAGCATGCTTGACGGCAAGAT TCCTGAACCGTTCTCTACTCATGCCAAGTCTGAGTGCTTCGCTTTTCTACAAAGAGGTTG ACTTGCTGCAGCCTATTGCTTTCGACAAGGTATTTGACCTTAATAAGTTCAATGCCCATT GTCATGGGTTTGTAAGGGTAGCTCGGTATTCAGAAGTTTCGAATCGTACCGAGCCTTTCA AACTTCAAAAGGGCAGTGGTAGGAGGTGGACAGTGGAGAGAGACTTGGATCAACTGCAGC AATCCAGATTGGGGGAGGCCGATGGCTTTGAAGTGATTCATGTCACTGGGAAGCATCCAT TTCTATGGCCTGACCATTGGCCAGTGAAAGACTATGCCAGGATCTTCGATTGCCTTGCTG TAGCTCCTGAGATAGAAACTGAAGTTGTCAGGGTCGTATCGAAGATTAAAGATGCAGGGA AAAAAGCAAGGCATGATGCTGCCATTTCTCATAATAAGAAGAGGATAGATAGTTTGACAA ATCTTCCTGTGCAGTACATTGCTGTTCACATGAGAATAGAGAAAGATTGGATGATCCATT GCAAGAAGTGGGAGCAGCGGTCCAATTTAAAGGAAATCTGTAGCAGCAAAGGAGAGATCA TTCATAAGGTCTCACAGATCACTGACCTACGTCGCCCGCTTGTAGTTTATCTTGCAGTAG CTGACAGCCTTCTAGAAGACGATTCAGTAACCAGTGGTTGGAGAGTTGGTATGGTTGCTT ATGAGAAGAAGAAACTTGGAGTTACTGACATATATGATAGGCAGCCTTACCTTATAAAGT CTGCCATTGACTTTGAGGTATGTGCAAGAGCGGATGTGTTTGTTGGCAATAGTTTCTCGA CATTTTCCAACCTTGTAGTGTTGTCCAGAACAGAAAGGCTATATAAATTAGGGAAGGCAA GCTCATGTGGTGAGGATGTTGGGCTGTCGTCCTATGCATACAATGTCATCGGAGATGATG GTGGGCCACAGAAATGGATGACAGATATGTTGGACACAAGTCTTCAGCGCATAAGTTATG GAACGAATAACATCTCCTGCCACTGATCTTTTAACACACTAGCATCTGACCGAAATACAA CCGTGGACAGGAAGATAGTTTTTATGGCTGAATCTTGTCAAGAGACGAGCAGGTGCAGCA GCTCGACGGTACTTTCCATGTTAGAATCTAGACAAGTCGATCTGGCATGTCACACTTCTG AAATGACTTTGGCCAAGAATTCCTTGTGTGTTCTGTGAGTGTGTACAAAAGTTGTTTCCT GAGCAGCATTGTGCTGAACAGTTTTTAGTTTGCAGAGCTAAACGTTATGTCATGCATTGT TTGCATTCTGTGGTTCACTGGGAGGAGCTTGATTCACACTGTTGAGAATCTGACGCTGTC ACTTTCACATGAAACATTTGTATCAAGTGTATTCGTTCGTTTATGCTGTTAAAACTCTTG ATTCTGTAGCACCTTGTAATTTCCTTGAGAAAGATACTTTGGATATGTTCCTTCTCAACA AAATGCTCAGTTGGTGTAATCACAGTCACCATATATCGACATCTGTGCAACGAAAGAGGT TTTGATGTGGGAAGTTCGAAGCTCATGGGATTAACAACAGCTTAAGAAGGAACAAAGGGG ACGACGATTTCTGCGCAG