- Transcript BART1_0-u59110.004
- Transcript IDBART1_0-u59110.004
- Gene IDBART1_0-u59110
Barley RTD
Exon Structure of BART1_0-u59110.004
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chrUn | 1 | 110453939 | 110453266 | - |
| chrUn | 2 | 110454143 | 110454053 | - |
| chrUn | 3 | 110455190 | 110454393 | - |
| chrUn | 4 | 110455515 | 110455273 | - |
| chrUn | 5 | 110455874 | 110455621 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 5.50294 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0.0000000289039 | 0.00377242 |
| morex | EPI | 3.16538 | 10.0103 | 7.9659 |
| morex | ROO | 4.04047 | 0.00000822663 | 0 |
| morex | ROO2 | 0.0000153335 | 0 | 0.000000000570806 |
| morex | NOD | 0 | 0.00000000198613 | 4.01951 |
| morex | RAC | 0.000828277 | 0.0150729 | 0.000000251047 |
| morex | INF1 | 0 | 0 | 2.95536 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0.0000000442815 | 0.000000000503094 |
| morex | LOD | 0.000891479 | 0.264072 | 8.66292 |
| morex | PAL | 1.79588 | 0 | 0.0000000951481 |
| morex | SEN | 3.26869 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06140.1 | +3 | 2e-126 | 392 | 287/565 (51%) | protein|no apical meristem protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g16480.1.p | +3 | 1e-151 | 459 | 323/630 (51%) | pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2060 bp)
>BART1_0-u59110.004 2060 150831_barley_pseudomolecules NNNNTGGCTACTCTCCCACTCCATCTCGTTCTACTCCTGACAATATGGAAGCAAACGAGG AAGCTATCACACTCATAAATAAGGAATCTCCTGAATCTGGTCTGCATGGATGTCCAATTG AGTTGCCATGTACAATTGAAACTCTGGGCGCCCCGGTTACAAGGTGGCTTGCAGACCGAA ATGGCAATCCCGGGACAGATGAAGCAAACGATGTAGGCATGCCTTTTCATCGTGGTGTCG ATGAAAGTCCCAAGCAGGCCGATCTGTCAGTTGGCTCTCTGGCTCACCTAATTGATTCAC AGACGAAAAATCTCGGTTCTCATGAGTTTGCCACCGTTTCTGCCCCCATGTTACCGGATG ACCATTTGGACAATCTTCTACTTCATTTAACTCATAATTCGGTGGAAGATTTCTTGAATG AAACAATTGCTGATCCAGACGAGCTTTCGTCAACTGCATGTAAAGTTCAGTACGATTCAG ACAATGGGATTATGCAGGGTGATTTGCTATATGATGATCCAAACTGGTTTGGTAATTTTC TGTCAGATGACACAAATCCACAACCAAGTGGATTATATGAGAATGCACCATTGCTTCCTT ATGGCACTAATCCTGATGTACTTTCCATGGACTCCGGCGACGAGTCCTTGCAAGATTTGT TCAATAGCATGGACGATTCAAGTTGGCAGAATGATGTATGGAGCAACGGATTTGGATTTA ATCCCATGCATCAGCAGTTACAGTCTACTGTGCATCCGAACTATATATTTTCTCAACAGG GCATTGCACGCAGGAGGCTTCGGCTACTAGATTCATTGTCTGATGTCAATGTTGAGAGTA GAGAGAGCATGACCAGAGATGAACATGAAGATGAAGAATCAGATATTGTAACTTCGAAAT ATAGGAGTGAATCTGTTGAATCATCTGCAGATGTAGATGAGTCTGAGTCAACCGGGGTTA CTATTATGAGCCGGCGCCGTGCTCTAACTAAAAGTGTGCCTTCCGACCGCGATGATGCTG AATCAACGGGGATTACTATTATGGGCCGGCGCTCTGCTCCAAGTTCAAATGCGCCTTCCG ATGAAGCTGATGCTGAGGCAACAGGGATTAATATTGTGAGCCGACGCACTGCTCCAAGTT CAAGCACAGATAACTCATTTACCACCGAACAGGGGACTGCAGTGCGAAGGTTGCGGCTAC AATCGAACCTTGACGCAGGATCATGTTCCAGTGTTGATGGTTTGTCAAGTTGCATTATAG AACATGGAAGTGAAAACGAAGGGCTGGAAGCTGAGATTGACGAGCATGTGGATACAAACT TCCTTGATGATGTTGGTTTTGCTGGCAACAGTCATGCTGATGAGCATATGTACATGCCTG ATCATGAAGCTAATTCTCTTACGAGGCTGCGGAAGACAGCAGAGAAAAGCGACAAGGAGA ACAAGCAGGAGTGTGGTCCCCAGTCACATGTGAGAGCACCAAGGAAGAGGGGAGGCTTCG CAGCACGCATGATCTTGCCAGTTCTGTCGGTGGCTCTTCTCGTTCTTGTTAGCGTTGGGG TCTACGGATGGGCATAATAGCTCTCTTAAAATGGGATTTAATGTGTCACATTTTCCCCAC ATCGGCTGTGAGCATTGTACATACTGTGTCTTACTGCCCGCGTTTAGACGGTTGTAAGAC AGAGAAGTGTTTGTTCCCCTTTCGGCGGGGAAGTGTAAGTGAGGTAGCAAATGAGAAGCG GGATGAAGCAAGGAGCAAGTGTTGCTGTAGATGCCTGTGACTTGGTACATGCTAGTTTTC GTTTTTCTGTCACCGCAGGTGTTGGCAACCAGGTTGTAGTCATCCATTATGCGTGTTGTT GTGATGTTGTAAGGTCTGAACCTAATTAGATCTGTTGCAGATCCTTTTTCCCATTTTGTG GAACTTTGCAGTCGCTTCATTTTTAGTGATGCAGTTGCTTCATTTTTAGTGATTCATCTC CCAATTTTAAGCGGGGTGAAATACTACCTGAGCTCTCAGCAGTCAGCACCAGCACACATC TGGTAAAAAAGAAAACCGAG
Protein Sequence (524 aa)
>BART1_0-u59110.004 524 150831_barley_pseudomolecules XGYSPTPSRSTPDNMEANEEAITLINKESPESGLHGCPIELPCTIETLGAPVTRWLADRN GNPGTDEANDVGMPFHRGVDESPKQADLSVGSLAHLIDSQTKNLGSHEFATVSAPMLPDD HLDNLLLHLTHNSVEDFLNETIADPDELSSTACKVQYDSDNGIMQGDLLYDDPNWFGNFL SDDTNPQPSGLYENAPLLPYGTNPDVLSMDSGDESLQDLFNSMDDSSWQNDVWSNGFGFN PMHQQLQSTVHPNYIFSQQGIARRRLRLLDSLSDVNVESRESMTRDEHEDEESDIVTSKY RSESVESSADVDESESTGVTIMSRRRALTKSVPSDRDDAESTGITIMGRRSAPSSNAPSD EADAEATGINIVSRRTAPSSSTDNSFTTEQGTAVRRLRLQSNLDAGSCSSVDGLSSCIIE HGSENEGLEAEIDEHVDTNFLDDVGFAGNSHADEHMYMPDHEANSLTRLRKTAEKSDKEN KQECGPQSHVRAPRKRGGFAARMILPVLSVALLVLVSVGVYGWA