- Transcript BART1_0-u59110.003
- Transcript IDBART1_0-u59110.003
- Gene IDBART1_0-u59110
Barley RTD
Exon Structure of BART1_0-u59110.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chrUn | 1 | 110453939 | 110453118 | - |
| chrUn | 2 | 110454143 | 110454053 | - |
| chrUn | 3 | 110455196 | 110454393 | - |
| chrUn | 4 | 110455515 | 110455273 | - |
| chrUn | 5 | 110455879 | 110455621 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.961539 | 0.64244 | 0 |
| morex | ETI | 0.0000000125965 | 8.15955 | 1.79391 |
| morex | LEA | 0 | 0.00000212002 | 0.00120222 |
| morex | EPI | 3.85747 | 0.0102041 | 0.000000914547 |
| morex | ROO | 0 | 0.00000735207 | 0 |
| morex | ROO2 | 15.371 | 25.7391 | 21.5922 |
| morex | NOD | 0 | 8.54532 | 0.0599217 |
| morex | RAC | 0.444212 | 2.58037 | 0.0864789 |
| morex | INF1 | 0.0000051565 | 0 | 0.613615 |
| morex | INF2 | 1.41175 | 0 | 7.68509 |
| morex | CAR5 | 0 | 0 | 0.000000000820624 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 12.979 | 11.0457 | 15.6256 |
| morex | LOD | 11.702 | 21.7894 | 1.86172 |
| morex | PAL | 5.13146 | 4.63247 | 6.68335 |
| morex | SEN | 0.00000390364 | 7.59162 | 8.30379 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06140.1 | +2 | 4e-125 | 391 | 286/565 (51%) | protein|no apical meristem protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g16480.1.p | +2 | 9e-151 | 459 | 323/630 (51%) | pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2219 bp)
>BART1_0-u59110.003 2219 150831_barley_pseudomolecules NNNNNNNNNTGGCTACTCTCCCACTCCATCTCGTTCTACTCCTGACAATATGGAAGCAAA CGAGGAAGCTATCACACTCATAAATAAGGAATCTCCTGAATCTGGTCTGCATGGATGTCC AATTGAGTTGCCATGTACAATTGAAACTCTGGGCGCCCCGGTTACAAGGTGGCTTGCAGA CCGAAATGGCAATCCCGGGACAGATGAAGCAAACGATGTAGGCATGCCTTTTCATCGTGG TGTCGATGAAAGTCCCAAGCAGGCCGATCTGTCAGTTGGCTCTCTGGCTCACCTAATTGA TTCACAGACGAAAAATCTCGGTTCTCATGAGTTTGCCACCGTTTCTGCCCCCATGTTACC GGATGACCATTTGGACAATCTTCTACTTCATTTAACTCATAATTCGGTGGAAGATTTCTT GAATGAAACAATTGCTGATCCAGACGAGCTTTCGTCAACTGCATGTAAAGTTCAGTACGA TTCAGACAATGGGATTATGCAGGCTCAGGGTGATTTGCTATATGATGATCCAAACTGGTT TGGTAATTTTCTGTCAGATGACACAAATCCACAACCAAGTGGATTATATGAGAATGCACC ATTGCTTCCTTATGGCACTAATCCTGATGTACTTTCCATGGACTCCGGCGACGAGTCCTT GCAAGATTTGTTCAATAGCATGGACGATTCAAGTTGGCAGAATGATGTATGGAGCAACGG ATTTGGATTTAATCCCATGCATCAGCAGTTACAGTCTACTGTGCATCCGAACTATATATT TTCTCAACAGGGCATTGCACGCAGGAGGCTTCGGCTACTAGATTCATTGTCTGATGTCAA TGTTGAGAGTAGAGAGAGCATGACCAGAGATGAACATGAAGATGAAGAATCAGATATTGT AACTTCGAAATATAGGAGTGAATCTGTTGAATCATCTGCAGATGTAGATGAGTCTGAGTC AACCGGGGTTACTATTATGAGCCGGCGCCGTGCTCTAACTAAAAGTGTGCCTTCCGACCG CGATGATGCTGAATCAACGGGGATTACTATTATGGGCCGGCGCTCTGCTCCAAGTTCAAA TGCGCCTTCCGATGAAGCTGATGCTGAGGCAACAGGGATTAATATTGTGAGCCGACGCAC TGCTCCAAGTTCAAGCACAGATAACTCATTTACCACCGAACAGGGGACTGCAGTGCGAAG GTTGCGGCTACAATCGAACCTTGACGCAGGATCATGTTCCAGTGTTGATGGTTTGTCAAG TTGCATTATAGAACATGGAAGTGAAAACGAAGGGCTGGAAGCTGAGATTGACGAGCATGT GGATACAAACTTCCTTGATGATGTTGGTTTTGCTGGCAACAGTCATGCTGATGAGCATAT GTACATGCCTGATCATGAAGCTAATTCTCTTACGAGGCTGCGGAAGACAGCAGAGAAAAG CGACAAGGAGAACAAGCAGGAGTGTGGTCCCCAGTCACATGTGAGAGCACCAAGGAAGAG GGGAGGCTTCGCAGCACGCATGATCTTGCCAGTTCTGTCGGTGGCTCTTCTCGTTCTTGT TAGCGTTGGGGTCTACGGATGGGCATAATAGCTCTCTTAAAATGGGATTTAATGTGTCAC ATTTTCCCCACATCGGCTGTGAGCATTGTACATACTGTGTCTTACTGCCCGCGTTTAGAC GGTTGTAAGACAGAGAAGTGTTTGTTCCCCTTTCGGCGGGGAAGTGTAAGTGAGGTAGCA AATGAGAAGCGGGATGAAGCAAGGAGCAAGTGTTGCTGTAGATGCCTGTGACTTGGTACA TGCTAGTTTTCGTTTTTCTGTCACCGCAGGTGTTGGCAACCAGGTTGTAGTCATCCATTA TGCGTGTTGTTGTGATGTTGTAAGGTCTGAACCTAATTAGATCTGTTGCAGATCCTTTTT CCCATTTTGTGGAACTTTGCAGTCGCTTCATTTTTAGTGATGCAGTTGCTTCATTTTTAG TGATTCATCTCCCAATTTTAAGCGGGGTGAAATACTACCTGAGCTCTCAGCAGTCAGCAC CAGCACACATCTGGTAAAAAAGAAAACCGAGGTAAAGTAATTGCCGCCCTGCCGCCGCCG CAGCGAGAAAAAGAAGAGATGTGGACTTTTTCAGACTTTAATCTGAAACTATAGCATAAA CTAAACTTTGTATGAAACTATTTCACGATGTGACCCTTTTAAAAATGTTAGAACCTGTG
Protein Sequence (528 aa)
>BART1_0-u59110.003 528 150831_barley_pseudomolecules XXXGYSPTPSRSTPDNMEANEEAITLINKESPESGLHGCPIELPCTIETLGAPVTRWLAD RNGNPGTDEANDVGMPFHRGVDESPKQADLSVGSLAHLIDSQTKNLGSHEFATVSAPMLP DDHLDNLLLHLTHNSVEDFLNETIADPDELSSTACKVQYDSDNGIMQAQGDLLYDDPNWF GNFLSDDTNPQPSGLYENAPLLPYGTNPDVLSMDSGDESLQDLFNSMDDSSWQNDVWSNG FGFNPMHQQLQSTVHPNYIFSQQGIARRRLRLLDSLSDVNVESRESMTRDEHEDEESDIV TSKYRSESVESSADVDESESTGVTIMSRRRALTKSVPSDRDDAESTGITIMGRRSAPSSN APSDEADAEATGINIVSRRTAPSSSTDNSFTTEQGTAVRRLRLQSNLDAGSCSSVDGLSS CIIEHGSENEGLEAEIDEHVDTNFLDDVGFAGNSHADEHMYMPDHEANSLTRLRKTAEKS DKENKQECGPQSHVRAPRKRGGFAARMILPVLSVALLVLVSVGVYGWA